Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2413 ATGAGCGTGGATCCAAAGAAAACTGCCTCTAACGGCCAGGAGAAAATGTTAACATCACAAGAACAGCAGGCATTGATCAATGAGGTGAGAAGGTTAATTGGGCCACAGTCTGGTAAGGCATCCATTTTTAGTTCTGATGCATGCATCTCAAGGTATTTGAGGGCACGGAATTGGAATGTTAAGAAGGCAGCTAAAATGTTGAAGCTGACCCTGAAATGGAGAGAAGAATACAAACCAGAAGAGATCTGCTGGGAAGATGTTGCTCATGAAGCAGAGACAGGAAAAATCTATAGAGCAGATTACATTGACAAGCGTGGGAGAACAGTCCTAGTAATGAGACCTAGTCGCCAGAACTCGAAGTCAACAAAaggacaaattaaatatttggtaTACTGCATGGAGAATGCTATTTTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGCTGATTGACTTCCAGGGTTTCAATATGTCACATATATCGATAAAGGTGACACGTGAAACTGCCCATGTATTACAAGAACATTATCCTGAACGGCTGGGTCTGGCAATACTATACAATGCACCTAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCACTATTAGAGCCTAAGACTTATAACAAAGTCAAGTTTGGTTACTCTGATGATGAGAACACCAAGAAGATTATGGaggatttgtttgattttgacCATCTTGAATCTGCATTTGGTGGGAATGATGATGCTGGATTTGACAGAAATAAATATGCTGAGAGAATGAAAGAGGATGACAAGAAGATTCCCTCTTTCTGGACAAGGGAAAACTCTCCATCATCAGTCCCAAATAATGCTCCTTCTTTAGATTCGATTAGGTTAGACACAGATTCTGATGCTTCAGacaatgagaaaatagactctTCCCCTGACACTGTGATGAGTACAGGTATCGTTAACCCTGATCAGAATATCTAG 960 0.3875 MSVDPKKTASNGQEKMLTSQEQQALINEVRRLIGPQSGKASIFSSDACISRYLRARNWNVKKAAKMLKLTLKWREEYKPEEICWEDVAHEAETGKIYRADYIDKRGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAILNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPLLEPKTYNKVKFGYSDDENTKKIMEDLFDFDHLESAFGGNDDAGFDRNKYAERMKEDDKKIPSFWTRENSPSSVPNNAPSLDSIRLDTDSDASDNEKIDSSPDTVMSTGIVNPDQNI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2413 319 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g2413 319 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Ssu6g2413 319 CDD SEC14 92 242 IPR001251 -
Ssu6g2413 319 Gene3D - 2 271 IPR036865 -
Ssu6g2413 319 MobiDBLite consensus disorder prediction 301 319 - -
Ssu6g2413 319 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Ssu6g2413 319 MobiDBLite consensus disorder prediction 267 288 - -
Ssu6g2413 319 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Ssu6g2413 319 PANTHER GH16843P 1 303 - -
Ssu6g2413 319 MobiDBLite consensus disorder prediction 265 319 - -
Ssu6g2413 319 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Ssu6g2413 319 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
Ssu6g2413 319 SMART sec14_4 90 244 IPR001251 -
Ssu6g2413 319 Pfam CRAL/TRIO domain 94 241 IPR001251 -
Ssu6g2413 319 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2413 Ssu-Chr6 56389894 56393042 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2413 - - gmx:100780151 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2413 6 56389894 56393042 Ssu6g2413 6 56389894 56393042 ECH
Ssu6g2413 6 56389894 56393042 Ssu1g3082 1 80564592 80566871 PCT