Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3082 ATGAGtgtCCCTATACTGAACAGTATGAGTATGGATCTGAAAAAGACCGCCTCTAACGGTCATGAGGAAATGCTAATATCACAAGAACAGCAGGCCAAGATCACTGAGGTGAGAAGGTTGATAGGGCCATTATCAGATAAGGCATCTGTGTACTGTTCTGATGCATCCATCTCAAGGTATTTAAGCTCACGAAATTGGAATGTCAAGAGGGCAGCTCAAATGTTGAAACAGAGcctaaaatggagaaaagaatACAAACCTGAAGAGATCCGCTGGGAAGAGGTTGCTGATGAAGCAGAGACAGGGATGATGTATAGACCAAATTATCATGACAAGTATGGGAGGTCCGTGCTTGTAATGAGACCTTGTCGCCAGAACTCAAAATCAACACAGGGACAGGTTAAGTATTTTGTATACGCCATGGAGAATGCCATTTTAAATCTTCCACCACACCAGGAACAGGTGGTCTGGCTGGTAGATTTCCAGGGTTTCAAGTTGTCAGATATATCATTCAAGGTGGCACGTGAAACTGCCTATATATTGCAAGAGTATTATCCAAAGCGGCTGGGTTTGGCAATAATCTACAATGCACCTATGATCTTCCAACCATTCTTCTCGATGGTAAAGCCCCTTTTAGAGACTGAGACtcacaataaaataaagtttggcTATTCCAACAACCACAACACAAAGAAGATTATGGAGGATTTGTTTGATATGGATAATCTTGAATCTGCATTTGGTGGGAATGGTAACACAGGATTTGACGTAAATAAATATGCTGAGGGAATGAAAGAGGATGACAATAAGAAATATTCTTTCTGGACGCAGGCCAAGTCTCTATCATCAGATGCACACAATGCTCCTTTAGATTCAATCAGTTAG 885 0.3977 MSVPILNSMSMDLKKTASNGHEEMLISQEQQAKITEVRRLIGPLSDKASVYCSDASISRYLSSRNWNVKRAAQMLKQSLKWRKEYKPEEIRWEEVADEAETGMMYRPNYHDKYGRSVLVMRPCRQNSKSTQGQVKYFVYAMENAILNLPPHQEQVVWLVDFQGFKLSDISFKVARETAYILQEYYPKRLGLAIIYNAPMIFQPFFSMVKPLLETETHNKIKFGYSNNHNTKKIMEDLFDMDNLESAFGGNGNTGFDVNKYAEGMKEDDNKKYSFWTQAKSLSSDAHNAPLDSIS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3082 294 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 9 293 - -
Ssu1g3082 294 CDD SEC14 109 250 IPR001251 -
Ssu1g3082 294 Gene3D - 5 284 IPR036865 -
Ssu1g3082 294 SUPERFAMILY CRAL/TRIO N-terminal domain 26 94 IPR036273 -
Ssu1g3082 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 92 255 IPR001251 -
Ssu1g3082 294 Pfam CRAL/TRIO domain 101 249 IPR001251 -
Ssu1g3082 294 SMART sec14_4 98 252 IPR001251 -
Ssu1g3082 294 PANTHER GH16843P 9 293 - -
Ssu1g3082 294 SUPERFAMILY CRAL/TRIO domain 92 271 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3082 Ssu-Chr1 80564592 80566871 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3082 - - gmx:100777065 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3082 1 80564592 80566871 Ssu1g3082 1 80564592 80566871 ECH
Ssu6g2413 6 56389894 56393042 Ssu1g3082 1 80564592 80566871 PCT