Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2412 ATGGCTGCTGGAGTGCACTACCAAGCAATTGGGGCTTTGCAATCCCATTCTCATATCAACAATTTTAATCATCTGCAAAAGTTTAACAATTTTGTAAGATTGGTGACAAAGGATTTTACCAGCAGTAATTGCTTGCCAAGAAGAGATTGTAGGGTAATTAGATCTTCAGCATCTCAAACATCAGTGGTTGACACAGTATCATCCCCTTCAAGAAGCAGAACTAGTGATAGAGACACTCACAAGAAATCAAATGAAGCTGCTTTGATCCTGATTCGACACGGCGAGTCCTTGTGGAATGAAAAGAACTTGTTCACTGGTTGTGTTGATGTCCCTCTAAGCAAGAAAGGTATACATGAGGCAATTGAAGCTGGCAAAAGAATTAGCAGTATTCCTGTGGATCTCATATTTACATCTGCTTTGATTCGTGCGCAAATGACAGCAATGCTTGCCATGACGCAGCACCGCCGCAAGAAGGTGCCTATCATAATGCACAATGAGAGTGAACAAGCAAGGGAATGGAGTCAAGTTTTTAGTGAAGATACAAAAAAGCAATCCATTCCAGTCATAGCAGCTTGGCAATTGAATGAAAGAATGTATGGGGAACTACAGGGTCTCAATAAGCAAGAAACAGCAGACAGATTTGGGAAAGAACAAGTACACGAGTGGCGTCGAAGTTATGACACACCTCCCCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGGGCAGTTGCCTATTTTAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTTATGATTGCAGCCCATGGGAATTCACTGAGATCCATTATTATGTATCTTGACAAACTAACTTCCCAAGAGGTGATTAGTTTAGAATTGTCAACTGGAATTCCAATGctttatattttcaaagaaGGAAGATTCATTAGAAGGGGGAGTCCAATAGGACCAACTGAAGCTGGAGTTTATGCCTACACTAGGGTATGCACCTATATCCCTTTTATATTTCGTTCCATTTTGATAAGATGA 1020 0.401 MAAGVHYQAIGALQSHSHINNFNHLQKFNNFVRLVTKDFTSSNCLPRRDCRVIRSSASQTSVVDTVSSPSRSRTSDRDTHKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIHEAIEAGKRISSIPVDLIFTSALIRAQMTAMLAMTQHRRKKVPIIMHNESEQAREWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDTPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPTEAGVYAYTRVCTYIPFIFRSILIR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2412 339 CDD HP_PGM_like 88 307 IPR013078 -
Ssu6g2412 339 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 90 99 IPR001345 GO:0003824
Ssu6g2412 339 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 1 324 - -
Ssu6g2412 339 PANTHER PHOSPHOGLYCERATE MUTASE 1 324 IPR005952 GO:0004619|GO:0006096|GO:0016868
Ssu6g2412 339 SUPERFAMILY Phosphoglycerate mutase-like 88 304 IPR029033 -
Ssu6g2412 339 SMART PGAM_5 87 273 IPR013078 -
Ssu6g2412 339 Pfam Histidine phosphatase superfamily (branch 1) 183 291 IPR013078 -
Ssu6g2412 339 Pfam Histidine phosphatase superfamily (branch 1) 88 161 IPR013078 -
Ssu6g2412 339 MobiDBLite consensus disorder prediction 62 82 - -
Ssu6g2412 339 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 85 312 IPR005952 GO:0004619|GO:0006096|GO:0016868
Ssu6g2412 339 Gene3D - 77 310 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2412 Ssu-Chr6 56382428 56384359 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2412 K01834 - gmx:100784422 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2412 6 56382428 56384359 Ssu6g2412 6 56382428 56384359 ECH
Ssu6g2412 6 56382428 56384359 Ssu1g3081 1 80560907 80562872 PCT