Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3081 ATGGCTGCTGAAGTATATCACCAGGCTATTGGCACTTGGCAATCCAATTCTTATctgaataattttaatcatcacCAAAAGCTTCGGAACAATTTAGTAAGATTGGCGGCAAGGGATTTTACCAGTAGTAATGGCTTGTCAAGAAGAAGTAACCGCTCTGGCCAGAGGAATTGTAGTATAATTCGATCTCTAGCTTCACAAACATCAGTGGTTGATCCAGTGTTGTTCCCGTCAAGAAGCAAAGCTGGCGACACTTACAAGAAATCAAATGAAGCAGCTTTAATCCTTATTCGGCATGGTGAGTCATTATGGAATGAAAAGAACTTATTCACAGGGTGTGTTGATGTTCCGCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTTACATCTGCTCTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGTGGGAAGGTGCCTATCATTATGCACAATGAGAGTGAACAAGCAAGGTCATGGAGTCAAGTTTTTAGTGAAGATACAAAAAAGCAGTCCATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGaatGTATGGGGAACTGCAGGGTCTCAATAAGCAAGAAACAGCAGATAGATATGGAAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAATGGTGAAAGTTTGGAAATGTGTGCTCAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTGAACTTTTATCTGGAAAGAATGTTATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCCCAAGAGGTCATTAGTTTGGAACTGTCAACTGGAATTCCCATGCTTTACATTTCAAAGAGGGGAGATTCATTAGGAGGGGGAGTCCCATAG 954 0.4067 MAAEVYHQAIGTWQSNSYLNNFNHHQKLRNNLVRLAARDFTSSNGLSRRSNRSGQRNCSIIRSLASQTSVVDPVLFPSRSKAGDTYKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPIIMHNESEQARSWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAQRAVAYFRDQIEPELLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYISKRGDSLGGGVP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3081 317 Gene3D - 84 311 IPR029033 -
Ssu1g3081 317 SUPERFAMILY Phosphoglycerate mutase-like 94 306 IPR029033 -
Ssu1g3081 317 PANTHER PHOSPHOGLYCERATE MUTASE 1 310 IPR005952 GO:0004619|GO:0006096|GO:0016868
Ssu1g3081 317 CDD HP_PGM_like 94 304 IPR013078 -
Ssu1g3081 317 Pfam Histidine phosphatase superfamily (branch 1) 189 296 IPR013078 -
Ssu1g3081 317 Pfam Histidine phosphatase superfamily (branch 1) 94 167 IPR013078 -
Ssu1g3081 317 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 1 310 - -
Ssu1g3081 317 SMART PGAM_5 93 279 IPR013078 -
Ssu1g3081 317 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 91 313 IPR005952 GO:0004619|GO:0006096|GO:0016868
Ssu1g3081 317 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 96 105 IPR001345 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3081 Ssu-Chr1 80560907 80562872 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3081 K01834 - gmx:100802621 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3081 1 80560907 80562872 Ssu1g3081 1 80560907 80562872 ECH
Ssu6g2412 6 56382428 56384359 Ssu1g3081 1 80560907 80562872 PCT