Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2409 ATGCTGCTCGGGAAAAGACCTCGTCCTCCAATGAAGAGAACCACAAGCATGTCCGAAATAACCTTGGATCTGAACACCGCTGCCTCTGATGCCGCAGACCAACAGAGATCAGGTGCTGGTACTGGTACTGGTGCTGCGTTAGATCAGACCAGGGCGTTGGCCACGCCCAAAATCCTCAGAAGACATTCTTCGGATTTCGTTGACACACCTCACTTCCTGCGCGCTTGCTTCCTCTGCAGATGCCGTCTCGTACCCGGTCGCGACATCTACATGTACAGGGGTGACAGTGCTTTCTGCAGCCTGGAGTGTCGTCAACAGCAGATGAACCAGGacgagagaaaagagaagtttGTTATGGCGTCAAAGAAACAAGTCATGGGTCCTCCACCATCTGGGTCTCAAGTCAACAACACCACCAAAGGCGAAACCACCGTGGTTGCGTTGTAG 447 0.5123 MLLGKRPRPPMKRTTSMSEITLDLNTAASDAADQQRSGAGTGTGAALDQTRALATPKILRRHSSDFVDTPHFLRACFLCRCRLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKEKFVMASKKQVMGPPPSGSQVNNTTKGETTVVAL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2409 148 Pfam zinc-finger of the FCS-type, C2-C2 64 114 IPR007650 -
Ssu6g2409 148 PANTHER FCS-LIKE ZINC FINGER 5 1 146 - -
Ssu6g2409 148 PANTHER FCS-LIKE ZINC FINGER 5 1 146 - -
Ssu6g2409 148 MobiDBLite consensus disorder prediction 123 148 - -
Ssu6g2409 148 MobiDBLite consensus disorder prediction 29 48 - -
Ssu6g2409 148 MobiDBLite consensus disorder prediction 29 44 - -
Ssu6g2409 148 ProSiteProfiles Zinc finger FLZ-type profile. 71 115 IPR007650 -
Ssu6g2409 148 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2409 Ssu-Chr6 56217743 56218384 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2409 - - gmx:100527853 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2409 6 56217743 56218384 Ssu6g2409 6 56217743 56218384 ECH
Ssu6g2409 6 56217743 56218384 Ssu1g3079 1 80478804 80479510 PCT