Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2394 ATGGAAAAGAGAGAGCTAATGGGGACAAATGAGGCAAGTCCTCCGGCTGTTGGAGAGGTAGAAGGAGATTCTTTTACTGTTTGGAGTGACAAAGATTGGGAAAAACACTCAGAGCGGCCAGAAACCCAAAATGTTGACCATGATGGCCCTGAGTTTGGCAATGAACAAGATGATATATCTGACAATGTAAATTCTCAAGCTGTTGAGAAGCTGGAAGGAGATGCTTTTACCATTCAGAGTGAAGATCATGACAAGGAATCAAAGGAGGGGGAAATTCAAAATATTGGTCATGATGGCCCTGGGCTTGACAATGAGCAAGATAATATGTCAGACAAGATAGATGAGGTGATAGATGTAGATTTGAGTACTCCTGAGGAAATAAAGGACAATGTGACAGGAGAATCTCAGTCGGCTCAGAGGGTGGGTGACAGTTGTGATTTGCAGTGTGGATCTCAACAAGAAAACTTGGAGACCAGTACTGTTCCAGGTGACTTGTTTCAAAAGGAGCATGAGATTAATTCCATAGAATCTGAAATTGAAGTTAATATTGTTGGACAAGAGTATTCTGGTGTTAAGGTAGACAGCAGTGGAGATTTTGAGCCTAAAAGTCAAGAAGTAAGTCTAGATAATAATTTTGGACACCATGGCTTGACTATAGAGGAGGATGACAGTAGAAGCCTGGAATCTGCACAAATTAATCAAAAGACAGAGAATACTTCAGAGGACAATAATTTGGAGCATGTAGTTGGTGGATCTGAGGTTCCTAGCACTGAAGTTGGCTGCAGCACATCTATCCATACTTTGGACACCAATCCAGAGGCGCCACGTGTGCTTGAGAAGGCATTATCTCTTAGAAACTTTGTTAGGGAGAAAAGTATAATAGCAGTCTCCATTGTGCTGCGTCACCTTTCTGGAAAAAGAGATGAATGTGCTGTGGGTAATTCTGATGAGGTGGGTAAGGATGCTTCAGATTTATCAAGAGACAGTGAAACCAACGAATTTTCTGAGAAGACAGTGGAGAAAACAACTTGGAACcccttaaattatattaaaatgtcatcTGATGTTGATGCTGAAAATAAAACTGTCCAGAGGGAGGAATCCATAACTGAAGGTCCACCACTACCCTTAGCCATGAAAGGAAGGATTATAGTGTACACAAGACTTGGGTGCCAAGAATGTAGAGAGGTTAGGAGATTTTTGTATATGAAAAGGCTTAGATATGTTGAAATCAACATTGATGTGTATCCCAGTAGAAAGATAGAGCTGGAGAAGAATTCTGGATCTACTTCTGTTCCCAAGgtttttttcaatgaaatacTTATTGGAGGCTTGAGTACGCTAAAGTCCTTAAATGAGTCTGGCAAGCTTATTGAGAAGATTGACTACCTCATTAATGAAGCACCATCATTTGAATGCCCGGTTCCCCCACTTTCTGGAGAGGATGATGTGTCCACTAGTGGGGCACTTGATGAAATGGCTCTAATTGTCcgcaaaatgaaaaaatgtattgTTGTGAAGGACCGATTTTGCAAAATGCGAAGGTTTACTAACTGCTTTCTTGGCTCTGAAGCTGTGGACTTCTTATCAGAAGATCAATATTTGGAAAGGAAGGAGGCTGTTGAGTTTGCACGAAAATTTGCCAGCAAACTCTTCTTTCAGCATGTTCTTGATGAACATCTATTTGAGGATGATAATCACCTGTATCGGTTTTTGGATGATGATCCAATTGTGGCATCTTTGTGTTACAACATTCCGAGGGGGATAATTACTGTGAAACCTAAGCCTATGACAGAAGTTGCATCGAGGTTGAGGCTTTTGTCCTACGCAATGTTTGAAGCCTATGCCTCTGAAGATGGACGTCATGTTGACTACAGAAGTATGCACGGAAGTGAGGAGTTTGCAAGGTATCTAAGAATAGTAGAAGAGCTCCAAAGAGGGGAAATATGGGATTTGTCTAGAGAAGAGAAGcttgctttttttattaatttatataatatgatgacCATCCATGCAATCTTAGTATGGGGTCACCCTTCTGGAGCACTGGAAAGAAGGAAATTGTTCGGAGactttaaatatgttattggtGGATCCACGTACTCACTTTCAGCTATTCAGAATGGCATTTTGAGAGGGAACCAGCGACCACCATATACCCTTATGAAGCCATTTAGTGCAAAAGATAAACGTTTAAGGGTGGCCCTCTCTTTCCCTGAGCCCCTTATTCATTTTGCTTTAGTATATGGTACTCGATCTGGACCAGCACTTCGTTGCTATTCTCCAGGGGATATTGACAAAGAATTAGTGGATGCAGCCTGTAATTTCTTAAGAAGTGGAGGccttttaatagattttactgCAAAGATTGCATATGCCAGTAAGATCCTTAAATGGTTTAGTGTAGATTTTGGTAAGAATGAGGTAGAGGTCCTGAAGCATGTGTCAAACTACTTAGATCCAGCTGACTCAGAATTATTGTTGGACCTACTTGCCACTTCTGAGTTTAAGGTGATATATCAGCCTTATGACTGGGGTTTGAACTGTTAG 2550 0.3953 MEKRELMGTNEASPPAVGEVEGDSFTVWSDKDWEKHSERPETQNVDHDGPEFGNEQDDISDNVNSQAVEKLEGDAFTIQSEDHDKESKEGEIQNIGHDGPGLDNEQDNMSDKIDEVIDVDLSTPEEIKDNVTGESQSAQRVGDSCDLQCGSQQENLETSTVPGDLFQKEHEINSIESEIEVNIVGQEYSGVKVDSSGDFEPKSQEVSLDNNFGHHGLTIEEDDSRSLESAQINQKTENTSEDNNLEHVVGGSEVPSTEVGCSTSIHTLDTNPEAPRVLEKALSLRNFVREKSIIAVSIVLRHLSGKRDECAVGNSDEVGKDASDLSRDSETNEFSEKTVEKTTWNPLNYIKMSSDVDAENKTVQREESITEGPPLPLAMKGRIIVYTRLGCQECREVRRFLYMKRLRYVEINIDVYPSRKIELEKNSGSTSVPKVFFNEILIGGLSTLKSLNESGKLIEKIDYLINEAPSFECPVPPLSGEDDVSTSGALDEMALIVRKMKKCIVVKDRFCKMRRFTNCFLGSEAVDFLSEDQYLERKEAVEFARKFASKLFFQHVLDEHLFEDDNHLYRFLDDDPIVASLCYNIPRGIITVKPKPMTEVASRLRLLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIVEELQRGEIWDLSREEKLAFFINLYNMMTIHAILVWGHPSGALERRKLFGDFKYVIGGSTYSLSAIQNGILRGNQRPPYTLMKPFSAKDKRLRVALSFPEPLIHFALVYGTRSGPALRCYSPGDIDKELVDAACNFLRSGGLLIDFTAKIAYASKILKWFSVDFGKNEVEVLKHVSNYLDPADSELLLDLLATSEFKVIYQPYDWGLNC 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2394 849 ProSiteProfiles Glutaredoxin domain profile. 371 468 - -
Ssu6g2394 849 MobiDBLite consensus disorder prediction 75 93 - -
Ssu6g2394 849 MobiDBLite consensus disorder prediction 25 54 - -
Ssu6g2394 849 MobiDBLite consensus disorder prediction 314 338 - -
Ssu6g2394 849 SUPERFAMILY Thioredoxin-like 380 462 IPR036249 -
Ssu6g2394 849 SMART DEP_3 499 573 IPR000591 GO:0035556
Ssu6g2394 849 MobiDBLite consensus disorder prediction 120 139 - -
Ssu6g2394 849 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 60 848 - -
Ssu6g2394 849 Pfam Glutaredoxin 383 439 IPR002109 -
Ssu6g2394 849 ProSiteProfiles DEP domain profile. 500 573 IPR000591 GO:0035556
Ssu6g2394 849 Gene3D Glutaredoxin 378 463 - -
Ssu6g2394 849 CDD DEP 496 570 - -
Ssu6g2394 849 MobiDBLite consensus disorder prediction 314 337 - -
Ssu6g2394 849 SUPERFAMILY "Winged helix" DNA-binding domain 492 581 IPR036390 -
Ssu6g2394 849 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 60 848 - -
Ssu6g2394 849 Pfam Protein of unknown function, DUF547 651 777 IPR006869 -
Ssu6g2394 849 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 505 571 IPR000591 GO:0035556
Ssu6g2394 849 MobiDBLite consensus disorder prediction 1 108 - -
Ssu6g2394 849 Gene3D - 485 578 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2394 Ssu-Chr6 55707492 55713633 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2394 - - ccaj:109814814 1441.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2394 6 55707492 55713633 Ssu6g2394 6 55707492 55713633 ECH
Ssu6g2394 6 55707492 55713633 Ssu1g3064 1 80085047 80088078 PCT