Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2387 ATGAAGACTCGTAGCTCCAAGAAGATCTCTGCAAAATGGGTTCCGATTTTCTCtgtattttccttccttattgGAATGCTCATGACAACCAGGATGAGGTGGGAGCCACCTGAATCTAATGGGGTGCTTCTGTCAAATCATCGACATGAGCAAGAACTGCAAGTGGTGTCTGGGGATTGTGCTACTAAAAAGCCTGTGGAGGATAAGGATGTAATGAGTGAAGTGTACAAAACCCATGAGGCTATTCAATCTCTAGACAAACAAGTTTCCATGCTTCAGATGGAACTGGCAGCAGCAAGGAGTACACGAGAGCCCGAGATCTCGGATGGTTTGGCTAACACCTTGGCCTCGGGGGTTTCCACTGAAGGCCCTCCTAGTAAAAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGTGATTCGGTTAGAGAGACTTGGATGCCTCAAGGTGAACAGCTTATTCAATTGGAACACGAGAAGGGAATTGTCATCAGATTCATGATTGGTCACAGTGCAACTTCTAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAATTGTCTGCAAAgacgaaaattttcttttctactgCAGTTGCAAAATGGGATGCTGATTTCTATGTCAAAGTGGATGACGATGTGCATGTCAATTTAGGTGTACTTGCAACAACCCTTACTCGTCACCGTTCTAAACCCAGGGTCTACCTTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAAGGATGTTAAGTATCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATATATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAAGCAATATTGCACAAATATGCCAATGAAGATGTGTCACTTGGTGCATGGTTCATAGGTCTGGAAGTTGAGCATATAGATGACCGCAGCATGTGCTGTGGGACTCCTCCAGACTGTGAGTGGAAAGCACAAGCAGGTAACATATGTGTTGCATCGTTTGACTGGAGCTGCAGTGGAATCTGCAAGTCAGTAGAGAAGATCAAATTTGTGCACTCAAAGTGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCTTTAGTTTAA 1197 0.4336 MKTRSSKKISAKWVPIFSVFSFLIGMLMTTRMRWEPPESNGVLLSNHRHEQELQVVSGDCATKKPVEDKDVMSEVYKTHEAIQSLDKQVSMLQMELAAARSTREPEISDGLANTLASGVSTEGPPSKKVFVVIGINTAFSSRKRRDSVRETWMPQGEQLIQLEHEKGIVIRFMIGHSATSNSILDRAIDSEEAQHKDFLRLEHVEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGVLATTLTRHRSKPRVYLGCMKSGPVLSRKDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQAILHKYANEDVSLGAWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKFVHSKCGEGDGAVWSALV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2387 398 Pfam Domain of unknown function (DUF4094) 10 101 IPR025298 -
Ssu6g2387 398 Coils Coil 82 102 - -
Ssu6g2387 398 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 6 390 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g2387 398 Gene3D - 120 344 - -
Ssu6g2387 398 Pfam Galactosyltransferase 143 340 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu6g2387 398 PANTHER HEXOSYLTRANSFERASE 6 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2387 Ssu-Chr6 55163078 55167436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2387 1 398 Glycosyltransferase AT1G77810 72.070 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2387 K20855 - gmx:100804402 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2387 6 55163078 55167436 Ssu6g2387 6 55163078 55167436 ECH
Ssu6g2387 6 55163078 55167436 Ssu1g3055 1 79947564 79952513 PCT