Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3055 ATGAAGACTCGCACCTCGACCAAAATCTCCGCAACATGGATTCCCATATTCTCTGTCTTTTCCTTCATTATTGGTATGCTCATCACAAGcagGATGTGGGAGCCACCCGAATCAAACGGGTTGCTTATTTCGCAGCATCAGCGTGACCAACAGCTACAAGTGATCTCAGGGGACTGCGCTACCAAGAAGATGCAGCCCAAGGACGCAGTGAGCGAATTGCAGAAAACCCATCAAGCCATTCAGCATGCCAGAGCTTTAGACAAGCAGGTTTCCATGCTTCAGATGGAGTTGGCAGCAGCTAGGAGTTCTCGTGAAAGTGGGATCTCGGATTCAAATGCTTCAACCACCGCTTCAGGGCAAGGTACTCCAAGGAAGAAGGCATTTATAGTGATAGGCATAAACACAGCTTTCAGTAGCAGGAAGCGGCGTGATTCAGTTAGAGAGACTTGGATGCCTcaagGTGAACAACTTCTTCAATTGGAACGGGAGAAGGGAATTGTTATCAGATTCATGATTGGCCACAGTGCAACTTCCAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCTCAGCACAAAGACTTCCTTCGCCTAGAACACGTTGAAGGGTATCACGAGCTGTCTGCAAAGACAAAGATTTTCTTTTCTACTGCAGTTGCAGTATGGGATGCTGATTTCTATGTCAAGGTGGATGATGATGTCCATGTCAATTTAGGTGTCCTGGCAACGACCCTTGCTCGTCATCGATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCTGGACCTGTCCTTTCTAGAAAGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTCCGACATGCAACTGGGCAGATTTATGCAATCTCTAAAGATCTGGCCACTTACATTTCCATCAACCAGCtgattttacataaatatgCTAATGAAGATGTCTCGCTTGGTGCATGGTTCATTGGTCTTGAAGTTGAACATATTGATGACCGCAATATGTGCTGTGGAACTCCTCCAGACTGTGAGTGGAAGGCGCAGGCAGGTAACATATGTGTTGCATCATTTGATTGGAGCTGCAGTGGAATCTGCAAGTCAGTCGAGAAGATTAAATATGTCCACTCAAAGTGTGGTGAAGGGGATGGAGCTGTTTGGAGTGCCTTATTTTAG 1191 0.45 MKTRTSTKISATWIPIFSVFSFIIGMLITSRMWEPPESNGLLISQHQRDQQLQVISGDCATKKMQPKDAVSELQKTHQAIQHARALDKQVSMLQMELAAARSSRESGISDSNASTTASGQGTPRKKAFIVIGINTAFSSRKRRDSVRETWMPQGEQLLQLEREKGIVIRFMIGHSATSNSILDRAIDSEEAQHKDFLRLEHVEGYHELSAKTKIFFSTAVAVWDADFYVKVDDDVHVNLGVLATTLARHRSKPRVYIGCMKSGPVLSRKDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQLILHKYANEDVSLGAWFIGLEVEHIDDRNMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKYVHSKCGEGDGAVWSALF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3055 396 PANTHER HEXOSYLTRANSFERASE 8 388 - -
Ssu1g3055 396 MobiDBLite consensus disorder prediction 104 121 - -
Ssu1g3055 396 MobiDBLite consensus disorder prediction 101 121 - -
Ssu1g3055 396 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 388 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g3055 396 Pfam Domain of unknown function (DUF4094) 10 103 IPR025298 -
Ssu1g3055 396 Pfam Galactosyltransferase 141 338 IPR002659 GO:0006486|GO:0016020|GO:0016758
Ssu1g3055 396 Gene3D - 118 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3055 Ssu-Chr1 79947564 79952513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3055 1 396 Glycosyltransferase AT1G77810 71.250 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3055 K20855 - gmx:100776715 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3055 1 79947564 79952513 Ssu1g3055 1 79947564 79952513 ECH
Ssu6g2387 6 55163078 55167436 Ssu1g3055 1 79947564 79952513 PCT