Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1967 ATGAGTGCCGTGAATCTCAACACATGGGCACGCCCCTGCTTCATTTTGAACCGAGCCGCAAGATCCAGATCCCCGATCTTATTTCACGGCGTCAGCAGCTTACCCATTTCCTCCGTCGCCGTTACAAGACGGCGAAGGGACAATAAACCCTCTTCTGCGTCTTTCTCGGTTTCCGCAGTGTTGACAAAAGAGGAGACCGTGGAGACGGAAGAGAAGCCCGCGTTCAACTTCAAGTCCTACATGGTTCAGAAGGCAAGCTTGGTGAACGGGGCCCTAGACGACGCCGTTTCGCTCCGCGAGCCGCGGAGGATCCACGAGGCGATGCGGTACTCGCTCCTCGCCGGCGGCAAGCGCGTGCGCCCGGTGCTCTGCGTCGCCGCCTGCGAGCTCGTCGGCGGCGCGGAGGCCACCGCGATGCCCGCCGCCTGCGCCATCGAGATGATCCACACGATGTCGCTCATGCACGACGACCTCCCCTCCATGGACAACGACGACCTCCGCCGCGGGAAGCCCGCCAACCACAAGGTCTTCGGCGAGGACGTCACCGTCCTCGCCGGCGACGCCCTCCTGGCCTTCGCCTTCGAGCACATCGCCGTCTCCACGGCCGGTGCCTCCCCGGCGCAGATCGTCCGCGCGATCGGGGAGCTCGCGCGGTCGATCGGCGCCCAGGGCCTCGTCGCCGGCCAGGTGGTCGACATCAATTCCGAAGGAGTGGAGGACGTCGGACTCGAGATGCTGGAATTCATTCACATCCACAAGACCGCGGCTCTGCTCGAAGGCGCGGTGGTTCTCGGCGCCATCCTCGGCGGCGGCTCCGATGACGAGGTTGAGAAATTGAGGAAGTTCGCGAGGTACATAGGGTTGCTGTTTCAGGTTGTTGATGATATTCTTGATGTTACCAAGTCTTCGCAGGAGTTGGGGAAGACTGCGGGGAAGGACCTCGTGGCTGATAAGGTTACTTATCCTAAGCTCTTGGGGATTGAAAAGTCCAAGGAGTTTGCTGCGAAACTGAACAAGGATGCTCAGGATCAGCTTGTTGGGTTTGACCCTGTTAAGGCTGCTCCTTTAATTGCTTTAGCCAATTACATTGCTCACAGGCAGAACTAG 1107 0.5998 MSAVNLNTWARPCFILNRAARSRSPILFHGVSSLPISSVAVTRRRRDNKPSSASFSVSAVLTKEETVETEEKPAFNFKSYMVQKASLVNGALDDAVSLREPRRIHEAMRYSLLAGGKRVRPVLCVAACELVGGAEATAMPAACAIEMIHTMSLMHDDLPSMDNDDLRRGKPANHKVFGEDVTVLAGDALLAFAFEHIAVSTAGASPAQIVRAIGELARSIGAQGLVAGQVVDINSEGVEDVGLEMLEFIHIHKTAALLEGAVVLGAILGGGSDDEVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKEFAAKLNKDAQDQLVGFDPVKAAPLIALANYIAHRQN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1967 368 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 368 - -
Ssu6g1967 368 CDD Trans_IPPS_HT 100 366 IPR000092 GO:0008299
Ssu6g1967 368 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 1 368 - -
Ssu6g1967 368 Pfam Polyprenyl synthetase 103 337 IPR000092 GO:0008299
Ssu6g1967 368 SUPERFAMILY Terpenoid synthases 77 345 IPR008949 -
Ssu6g1967 368 ProSitePatterns Polyprenyl synthases signature 1. 153 169 IPR033749 -
Ssu6g1967 368 ProSitePatterns Polyprenyl synthases signature 2. 286 298 IPR033749 -
Ssu6g1967 368 Gene3D Farnesyl Diphosphate Synthase 69 368 IPR008949 -
Ssu6g1967 368 SFLD Polyprenyl Transferase Like 80 366 - -
Ssu6g1967 368 SFLD Isoprenoid Synthase Type I 80 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1967 Ssu-Chr6 35691736 35692842 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1967 K13789 - gmx:100785539 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2402 2 81821371 81822499 Ssu6g1967 6 35691736 35692842 PCT