Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2402 ATGACCCCGCATCAAGACGCATATCTCGAACCGAACATGAATTCTGTGAATCTTGGAACATGGCCTTGTCCCACCTTTATGCTCAACACACCTTCACCTCTCATTCCCTTTTTTCACGCTCTCAGAACGGTCCCCGTTACCCCCAAACGCGGAACAGCAAAACTAATTTCCCCTCTCTCCGTCTCCGCTGTGCCCACAAAGGAAGTCACAAGAAGATCCACGAAGCCATGCGCTACTCCCTCCTCGGCCGGCGGCAAGAGGGTTCGCCCGGTGCTCTGCATCGCCGCCTGCGAGCTCGTCGGCGGCAGCGAGGCCACCGCGATCCCCGCCGCCTGCGCGGTGGAGATGATCCACACCATGTCGCTCATTCACGACGACCTGCCCTGTATGGACAACGACGACCTCCGGCGCGGAAAGCCGACCAACCACAAGGTCTTCGGCGAGGACGTGGCAGTCCTCGCCGGCGACTCGCTCCTCGCGTTCGCGTTCGAGCACGTGGCCGCGTCCACGAAAGGGGTGTCCCCGCCGCGCGTGGTTCGCGCAATTGGGGAGTTAGCAAAATCGATTGGCACGGAAGGCCTTGTCGCGGGACAAGTGGTGGATATCGATTCGGGAGGGTTGTCGGATGTGGGGTTGGAGAGGTTGGAGTTCATTCACCTTCACAAAACGGCGGCGTTGCTGGAAGCTGCGGTTGTGCTGGGGGCGATAGTGGGGGGTGGGTCGGACGAGGAGGTTGAGAGGTTAAGGAAGTTCGCTAGGTGCATTGGGTTGTTGTTTCAGGTTGTGGATGACATTCTCGATGTTACGAGGTCGTCCGAGGAATTGGGGAAGACGGCGGGGAAGGACTTGGTGGCTGATAAGGTCACGTACCCTAAGCTTTTGGGGATACATAAGTCTAAGGAGTTTGCTGATAATTTGATCCATGATGCGAAGGAACAATTGTCTGGGTTCGATCCCCGAAAGGCGGCTCCGTTGTTTGCTTTAACTAATTACATTGCTTATAGGCAAAATTAA 1014 0.5661 MTPHQDAYLEPNMNSVNLGTWPCPTFMLNTPSPLIPFFHALRTVPVTPKRGTAKLISPLSVSAVPTKEVTRRSTKPCATPSSAGGKRVRPVLCIAACELVGGSEATAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDSLLAFAFEHVAASTKGVSPPRVVRAIGELAKSIGTEGLVAGQVVDIDSGGLSDVGLERLEFIHLHKTAALLEAAVVLGAIVGGGSDEEVERLRKFARCIGLLFQVVDDILDVTRSSEELGKTAGKDLVADKVTYPKLLGIHKSKEFADNLIHDAKEQLSGFDPRKAAPLFALTNYIAYRQN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2402 337 ProSitePatterns Polyprenyl synthases signature 2. 255 267 IPR033749 -
Ssu2g2402 337 CDD Trans_IPPS_HT 82 335 IPR000092 GO:0008299
Ssu2g2402 337 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 83 337 - -
Ssu2g2402 337 SFLD Isoprenoid Synthase Type I 81 335 - -
Ssu2g2402 337 SFLD Polyprenyl Transferase Like 81 335 - -
Ssu2g2402 337 SUPERFAMILY Terpenoid synthases 62 318 IPR008949 -
Ssu2g2402 337 Gene3D Farnesyl Diphosphate Synthase 54 337 IPR008949 -
Ssu2g2402 337 Pfam Polyprenyl synthetase 77 308 IPR000092 GO:0008299
Ssu2g2402 337 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 83 337 - -
Ssu2g2402 337 ProSitePatterns Polyprenyl synthases signature 1. 122 138 IPR033749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2402 Ssu-Chr2 81821371 81822499 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2402 K13789 - gmx:100778289 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2402 2 81821371 81822499 Ssu2g2402 2 81821371 81822499 ECH
Ssu2g2402 2 81821371 81822499 Ssu6g1967 6 35691736 35692842 PCT