Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1962 ATGCACGCACCCCCAACCTCCTATTCCTCCCTCTGTCTGTTCCTAGTTTTCGCTTCTTCTTCAAATGTTTTATATCAACCCTTGGGTGTCATCTCTCACTGTCACACTCAAATCCCACATCGCTCACACCCGCCACCAATGGCACCTACCACCACACCctccttcctcttcctcttcctcttcacaTTCCCATGCGCCATCCTCCTCTTCTCAACACAAACCACCAGCACCACCACGCAACGTTTCAATGAAGCTCCAAAATTCTACAACTCCCCCACGTGCGACACCCTCCACCACCAGCCGAACCGCACGTGCGCCGCCAACGCAATCCACGTGGCAATGACCCTCGACGTGGCGTACCTCCGCGGCTCCATGGCGGCAATCCGCTCCGTGCTCCAACACACCTCCTGCCCGGAAAACATCATCTTCCACTTCGTCTCCGCCGCGTCGAAACCTTCCTCCGCCGCAACCCTCAACGAAACACTAACCACCTCCTTCCCCTACTTAAACTTCCGAATCTACCCCTTCCGCGACGACGCCGTTTCGGGGCTCATCTCCACCTCCATACGCTCCGCGCTGGACTGCCCCCTCAACTACGCGCGAACCTACCTCGCGAGCCTCCTCCCCCGCTGCGTCACCAGAGTCGTGTACCTCGACTCCGACTTGGTCCTCGTCGACGACATCGCGAAGCTCGCCGCCACGCCGCTCGGCCCTGACGCCGTCCTCGCCGCGCCGGAGTACTGCTCCGCCAACTTCTCCGCCTACTTCACGCCCTCGTTCTGGGCCAACCCCTCGCTCTCCCTCACGTTCGCCAACCGGAGGAGGCGGCCGTGCTACTTCAACACCGGCGTCATGGTCGTCGACCTCCGCCGGTGGCGCGCCGGCGACTACACCACCGCGATCGAGGAGTGGATGGAGCTCCAGAAGAGAATGCGGATCTACGAGCTCGGCTCGATGCCGCCGTTCCTGCTGGTCTTCGCCGGGAAGATTGCGCCGGTGCATCACCGGTGGAACCAGCACGGGCTCGGCGGGGATAACTTTCGTGGGCTTTGCCGGGATCTGCATCCCGGGCCCGTGAGCCTGCTGCATTGGAGTGGGAAGGGGAAGCCGTGGGCCAGGCTCGATGCCAACAGGCCTTGCCCTTTGGATGCGTTGTGGGCTCCCTATGATCTGCTCGAGACTCGTTTCGCTCTTCAGGCCTAG 1203 0.6035 MHAPPTSYSSLCLFLVFASSSNVLYQPLGVISHCHTQIPHRSHPPPMAPTTTPSFLFLFLFTFPCAILLFSTQTTSTTTQRFNEAPKFYNSPTCDTLHHQPNRTCAANAIHVAMTLDVAYLRGSMAAIRSVLQHTSCPENIIFHFVSAASKPSSAATLNETLTTSFPYLNFRIYPFRDDAVSGLISTSIRSALDCPLNYARTYLASLLPRCVTRVVYLDSDLVLVDDIAKLAATPLGPDAVLAAPEYCSANFSAYFTPSFWANPSLSLTFANRRRRPCYFNTGVMVVDLRRWRAGDYTTAIEEWMELQKRMRIYELGSMPPFLLVFAGKIAPVHHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWAPYDLLETRFALQA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1962 400 Pfam Glycosyl transferase family 8 111 373 IPR002495 GO:0016757
Ssu6g1962 400 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 111 380 IPR029044 -
Ssu6g1962 400 PANTHER HEXOSYLTRANSFERASE 60 400 - -
Ssu6g1962 400 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 60 400 - -
Ssu6g1962 400 SUPERFAMILY Nucleotide-diphospho-sugar transferases 110 391 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1962 Ssu-Chr6 35532335 35533537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1962 80 398 Glycosyltransferase AT3G50760 71.875 4.51e-177 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1962 K20893 - gmx:100805007 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2407 2 81875490 81876545 Ssu6g1962 6 35532335 35533537 PCT