Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1961 atgccACCTTCTTACTGCGTGAAGGAGAGAAAACCATGTGTGAGATGGGTTGAGATATATTTCAAAGATTGCCTTTGCAATTTGAAAGATGACATCTCGTTCAGTTTCGGGCTCACAAGTCTAGTATTCTGGGGTGTAGCTGAAATTCCTCAGATAATCACCATTTTTCGTACTAAGACAAGTCATGGAGTGTCCCTTATCTTTCTCCTCACTTGGGTCGCTGGGGATATATGCAATTTGACGGGTTGCCTTCTTGAACCAGCCACTTTGCCAACACAGTATTACACAGCTCTGCTTTACACAATCACTACGATCGTATTACTGctgcaaattatatattatgactaCATCTGCAGATGGTACAAACATCGTCAAAAGGTCAACCACAAAAGGGATcatgaagaagagaaaaaaccATTGAAGCCACCGAAACCAAGTAGCAAGTCTGGAATTCCAATACCAAATAGCACACCCGAAGCAGAACCTAGACAGGAGTACTACTACATGTCAGCAAGATCATTGGCAGGGAGTGGCACTCCGCCCTGGGGAACCTACATAAGAGCTGCTAAAAGTGGCCCTTCAGCCTCGGAATTGATCAACGACTCTTCTTCCGAGGATGAAGCATCTCCAGCTTCCTCTAATAATGCTGCAACTCAAGCTAGGCCAATCCCACGTCCCGTAGCTGCAAGTTATGGAACATTTCTAGCTGCTACTGTTAATTTGCCTCTTAAAGGTAATGCTTTGAGAGAAGGATACATGGGATTTAGTGGAAGAAAGCTTTTGCAGGAGTACGAGAAACATAGTGCATTTGGTCAATGGTTGGGATGGCTCATGGCTGCTATCTACATAAGTGGTCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGCAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTTGCATTGATCGCTAATGTCACTTACGTGGGAAGTATTCTTGTAAGAACTACAGAATTGGAAAGCATCAAAGCTAATATGCCATGGTTATTGGATGCCGTATTATGCGTGGCATTGGACCTTTTCATAATATTACAGTACATCTACTATAGATACTTTCGAAGGAGAGAAAGCAAATGA 1104 0.413 MPPSYCVKERKPCVRWVEIYFKDCLCNLKDDISFSFGLTSLVFWGVAEIPQIITIFRTKTSHGVSLIFLLTWVAGDICNLTGCLLEPATLPTQYYTALLYTITTIVLLLQIIYYDYICRWYKHRQKVNHKRDHEEEKKPLKPPKPSSKSGIPIPNSTPEAEPRQEYYYMSARSLAGSGTPPWGTYIRAAKSGPSASELINDSSSEDEASPASSNNAATQARPIPRPVAASYGTFLAATVNLPLKGNALREGYMGFSGRKLLQEYEKHSAFGQWLGWLMAAIYISGRLPQIWLNIKRGSVEGLNPFMFVFALIANVTYVGSILVRTTELESIKANMPWLLDAVLCVALDLFIILQYIYYRYFRRRESK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1961 367 Pfam PQ loop repeat 32 88 IPR006603 -
Ssu6g1961 367 Pfam PQ loop repeat 271 324 IPR006603 -
Ssu6g1961 367 PANTHER PQ-LOOP PROTEIN/TRANSMEMBRANE FAMILY PROTEIN 1 367 - -
Ssu6g1961 367 Gene3D - 35 133 - -
Ssu6g1961 367 Gene3D - 271 366 - -
Ssu6g1961 367 MobiDBLite consensus disorder prediction 196 220 - -
Ssu6g1961 367 MobiDBLite consensus disorder prediction 128 143 - -
Ssu6g1961 367 SMART ctns 46 77 IPR006603 -
Ssu6g1961 367 SMART ctns 284 315 IPR006603 -
Ssu6g1961 367 MobiDBLite consensus disorder prediction 128 160 - -
Ssu6g1961 367 MobiDBLite consensus disorder prediction 196 221 - -
Ssu6g1961 367 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1961 Ssu-Chr6 35504637 35511038 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1961 K23678 - gmx:100787660 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2408 2 81893214 81898356 Ssu6g1961 6 35504637 35511038 PCT