Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2408 ATGCCTCCCTCTTACTGCGTGAAGGAGAGTAAACCCTGTGTGGCTTGGGTTGAGAAATACTTCAATGATTGTCTCTGCAATCTGAAAGATGACATCTCCTTTGGCTTCGGCTTCATCAGTCTCATATGTTGGGGAGTAGCAGAAATTCCTCAGATAATCACTAACTTTCGCGCTAAGTCTAGCCATGGTGTCTCCTTAGCCTTTCTCCTCACTTGGGTCGCGGGCGATATATTCAACCTCGTTGGTTGTCTTCTGGAGCCAGCCACGTTGCCGACCCAGTACTACACTGCTCTGCTTTACACAATCACTACGATCGTGTTAGTACTGCAAAGTTTCTATTATGACTACATCTATAAATGTGGCAAGCGTCATCGGAAGATCGACGAGgcccaggaggaagagaaaaaacCTTTGAGACCAAAACCACGTCGCGAGTCTGGGATTCCAATACAACATGACGGACCCAAAGCAACACCTCGACGGGAGTACTACTATAGGTCAGCGAGATCTTTGGCTGCTAATGATACTCCACCATTTGGTACCTACTTGAGAGCTGCTAAAAGTGTCCCTTCAACCATGGAAATGAGCAACGACGATTCATCTTCTGACGATGAGGCACCTCCACGTTCTTCTACGAAGCCTGTAACACAGTCTAGACCCATCCCCCGTTCTGTCCCTGCAAGCTATGGAACTTTTCTAGCAGCATCTATGAACTTGCCCCGTCAGGGTAGTGCTTTGAAGGAGGGATACATAAGATTCAATGGAAGAAAACTACTCTTGCAGGAGCACAACATGCACAGTGCTTTGGGCCAATGGTTAGGATGGCTCATGGCTGTTATCTATATGGGTGGCCGGCTCCCTCAAATATGGTTGAATATTAAAAGAGGAAGCGTGGAGGGCTTAAATCCTCTTATGTTCATCTTTGCACTAATCGCCAATGCCACTTACGTGGGAAGTATTCTTGTACGAACTACCGAATGGGAAAGCATCAGAGGTAATATGCCATGGCTGTTGGATGCCATAGTTTGCGTGGCATTGGACCTATTCATAATTTTGCAGTACGCCGACTATAGATACCTTCGGAAGAAAGCAGGAAGCGATGATGCTGATTATGGAGACTACAAAGAGGCCAACAAAACTTTTGTGTCTTGA 1152 0.4549 MPPSYCVKESKPCVAWVEKYFNDCLCNLKDDISFGFGFISLICWGVAEIPQIITNFRAKSSHGVSLAFLLTWVAGDIFNLVGCLLEPATLPTQYYTALLYTITTIVLVLQSFYYDYIYKCGKRHRKIDEAQEEEKKPLRPKPRRESGIPIQHDGPKATPRREYYYRSARSLAANDTPPFGTYLRAAKSVPSTMEMSNDDSSSDDEAPPRSSTKPVTQSRPIPRSVPASYGTFLAASMNLPRQGSALKEGYIRFNGRKLLLQEHNMHSALGQWLGWLMAVIYMGGRLPQIWLNIKRGSVEGLNPLMFIFALIANATYVGSILVRTTEWESIRGNMPWLLDAIVCVALDLFIILQYADYRYLRKKAGSDDADYGDYKEANKTFVS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2408 383 MobiDBLite consensus disorder prediction 129 159 - -
Ssu2g2408 383 MobiDBLite consensus disorder prediction 190 224 - -
Ssu2g2408 383 MobiDBLite consensus disorder prediction 207 224 - -
Ssu2g2408 383 Gene3D - 270 371 - -
Ssu2g2408 383 Gene3D - 35 129 - -
Ssu2g2408 383 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 3 380 - -
Ssu2g2408 383 PANTHER PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN 3 380 - -
Ssu2g2408 383 SMART ctns 46 77 IPR006603 -
Ssu2g2408 383 SMART ctns 283 314 IPR006603 -
Ssu2g2408 383 Pfam PQ loop repeat 32 88 IPR006603 -
Ssu2g2408 383 Pfam PQ loop repeat 269 327 IPR006603 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2408 Ssu-Chr2 81893214 81898356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2408 K23678 - gmx:100815310 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2408 2 81893214 81898356 Ssu2g2408 2 81893214 81898356 ECH
Ssu2g2408 2 81893214 81898356 Ssu6g1961 6 35504637 35511038 PCT