Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1951 ATGGCAGAAATTAGGCTCACCCGGGTGGAGCAAGGCCAAACCAAGATTAAAAATGTTCCAATAGCTGTGACCCCAGAAGGGTTTTGGTGCTGCCCTTCTCCTGTGGTGTTTCAGAAAAGCCTCAAGGCTCAAAATCCCCTCAATAAACCCAAACCCTCTTCACCCCCACCACCAAAAACCAGTGTTCAGAAAAAGCCAGTTCCTGTGCCTGTGCCTGTGCCAGTGTGTGAGAGAAGAACTGCTGCCCCTTCAAGATTTGTACTCTCTGATGATCAGCAATGTGCAACTGCTCCAGAAAGGCATCCTCCACCTGCCACATCTGTGGCTGTAGAGAGGGCACCCAGGCCTAAAATTGAATCTTTGCCAAAGAAGGTTGCTATTGAGTTTGGTGAACCCGGAACTTGTGATATGAAAGTGGTTTTGTTAGGAAAGCAGGGATTTTGTGTCAAGTTGAGTGTGCACAGGGATGTTCTGACAGAGAAGAGTAGCTTCTTTTCTGAAAAACTCTATGAACAATCGGCTTTGCCGTGTCTCCAAATCAGAGACTGTGAGGATGTTGAGATATATGTGGAAGCTGTTGGTCTTATGTACTGTAAGGAGATGAAGCAGCGGCTTATGAAGCAAAGTGTTTCTCGCATTCTTCGAATACTTAAGGTGGCAGAATTCCTTGGCTTCAGCTCATGTATCCAATCATGTTTGGAGTACTTGGAGGCAGTCCCTTGGGttggagaagaagaggaagaaaaggtgGTTTCAACTGTACTACAACTCCAAGCAGAAGGAATTGGGGTCAACCCTGTGCTGAAACGAGTTTCATCTGACATTTCTAATGTCCCAAAAGACACTCTTTCCCACATCATCGACCTTGTCCTCAAAAGCAACGAGGAAAGAGGCCGCCGAGAGATGAAATCCACTGTTCTAAAGCTCCTCAGGGAGAACAACAGTCTTCCCAGCCACGCGCGTTCAACCGACATATGCAGTGACATGATTTACAGATCATGCAGAAGCTGCTTGGATTCGTTGCTGTCTCTGTTCAGGCAGGCCGCAGAACCGGACAAACCGGGCGAGGACCGCGATCCTACGGCAAAGTGCATAGCTATTGAAGCGGATAACCTATCATGGTTGCTTGAGATCTTGGTTGACAAACAGGCTGCTGATGAGTTTGCACTGATGTGGGCAAACCAGCAGGAACTGGCTGTGTTACACGGAAAGCTGCCGATCGTGTCGCGCTACCATGTTAGCTGCCTTTCTGGGAGGCTGTATGTTGGCATTGGGAGAGGGGAGGTGCTGCCGTCGAAGGACACGCGCCGGTTGTTGTTGCAGACGTGGCTGCAGCCTCTGATGAATGACTACAACTGGTTGCAGCATGGATGCAGGTCATTTGACAGGAAGCTTGTGGAGGAAGGAATTGGGAGGACTATCCTCACCTTGCCTCTTGAGGATCAACAGAGCATTTTGCTTTCATGGCTGGGGAGTTTCTTGAAGACTGGTGATGGCTGTCCCAATCTTCAGAGGGCTTTTGAGGTGTGGTGGAGGAGAACTTTCATTAGGCCGTATGTGGAAAACCAAGGCAATAATGTTGTTGTGGCAGATGGTTCAGTGTTGCCAAAGCaggatgaatga 1623 0.4775 MAEIRLTRVEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKSLKAQNPLNKPKPSSPPPPKTSVQKKPVPVPVPVPVCERRTAAPSRFVLSDDQQCATAPERHPPPATSVAVERAPRPKIESLPKKVAIEFGEPGTCDMKVVLLGKQGFCVKLSVHRDVLTEKSSFFSEKLYEQSALPCLQIRDCEDVEIYVEAVGLMYCKEMKQRLMKQSVSRILRILKVAEFLGFSSCIQSCLEYLEAVPWVGEEEEEKVVSTVLQLQAEGIGVNPVLKRVSSDISNVPKDTLSHIIDLVLKSNEERGRREMKSTVLKLLRENNSLPSHARSTDICSDMIYRSCRSCLDSLLSLFRQAAEPDKPGEDRDPTAKCIAIEADNLSWLLEILVDKQAADEFALMWANQQELAVLHGKLPIVSRYHVSCLSGRLYVGIGRGEVLPSKDTRRLLLQTWLQPLMNDYNWLQHGCRSFDRKLVEEGIGRTILTLPLEDQQSILLSWLGSFLKTGDGCPNLQRAFEVWWRRTFIRPYVENQGNNVVVADGSVLPKQDE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1951 540 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 527 IPR038920 -
Ssu6g1951 540 MobiDBLite consensus disorder prediction 89 114 - -
Ssu6g1951 540 SUPERFAMILY POZ domain 134 237 IPR011333 -
Ssu6g1951 540 MobiDBLite consensus disorder prediction 49 69 - -
Ssu6g1951 540 PANTHER BTB/POZ DOMAIN PROTEIN 1 527 - -
Ssu6g1951 540 MobiDBLite consensus disorder prediction 44 69 - -
Ssu6g1951 540 Gene3D Potassium Channel Kv1.1; Chain A 129 260 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1951 Ssu-Chr6 35204729 35208676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1951 - - gmx:100789609 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2423 2 82492136 82495275 Ssu6g1951 6 35204729 35208676 PCT