Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1720 ATGGGGATGTTTTACCTCTCAATCTATCTCATTGCCTTGGGGAATGGAGGGTATCAGCCAAATATTGCCACATTTGGAGCTGACCAGTTTGACGAGGAGCACTCAAAGGAGGGTTTCTCAAAGGTGGCCTTCTTTAGCTACTTCTACCTGGCTTTGAACCTTGGTTCACTTTTCTCAAACACAATTCTAGGTTATTATGAAGATGAAGGAACGTGGGCACTTGGGTTCTGGGTGTCTGCGGGCTCTGCTTTTGCCGCCCTTGTCTTATTTCTTCTTGGGACCCCAAGATATAGACACTTCAAACCCAGTGGCAATCCTCTTTCAAGGTTCTGCCAAGTCCTTGTTGCTGCATCAAGGAAATGGAGAGTTCAAATGACAGAAAATGAAGAGGATTTGTATGTCATGGATGAAAATGAATCTTCCACTAATGGCAACAGAAAGATTCTCCATACCAACGGGTTCAGGTTTCTGGATAGGGCATCATTTATATGTTCCAGAGATCTAGAGGACCAAAAAGGAGGCCTTTATAACTATTGGCGTCTCTGCCCTATAACTCAGGTTGAAGAAGTGAAGTGCATACTAAGACTTCTTCCAATTTGGCTCTGCACCATAATATACTCGGTGGTCTTCACACAAATGGCTTCTCTTTTTGTGGAGCAAGGGGCCGCCATGAAAACTACAATTTCCCATTTCAGAATACCACCAGCAAGCATGTCTAGCTTTGACATCCTCAGTGTAGCtgtcttcattttcttctaccGTCGAGTGATTGATCCACTTGTGGGAAAACTTAAAAAGACAAGTTCCAAGGGACTTACTGAGCTTCAGAGAATGGGAATTGGGCTTGTTATAGCTGTAATGGCAATGGTTTCAGCTGGAATAGTTGAATGCTACAGGCTTAAGTATGCAAAACCAGGATGCCCCCACTGCAGTGGTACAAGCTCTCTAAGTATCTTCTGGCAAATTCCTCAGTATGCACTCATAGGAGCTTCTGAGGTTTTTATGTATGTAGGCCAGTTAGAATTCTTCAATGCTCAGACGCCAGATGGCTTAAAGAGCTTTGGAAGTGCCCTTTGCATGACATCCATCTCCCTTGGGAACTATGTAAGTAGCTTACTTGTTAGTATGGTTATGAAGATTTCCACTGAGGATCACATGCCAGGGTGGATCCCTGGAAACTTAAACAGAGGTCACCTAGATAGGTTTTATTTCCTCTTAGCTGCCTTGACATCAATAGACTTGGTCGTTTATATTGCATGTGCAAAGTGGTTCAAGAGTATACAGCTGGAAGGGAAATATGAAGAGAATGATAAGCCTGGTAACTTTAAAGTCTAA 1335 0.4262 MGMFYLSIYLIALGNGGYQPNIATFGADQFDEEHSKEGFSKVAFFSYFYLALNLGSLFSNTILGYYEDEGTWALGFWVSAGSAFAALVLFLLGTPRYRHFKPSGNPLSRFCQVLVAASRKWRVQMTENEEDLYVMDENESSTNGNRKILHTNGFRFLDRASFICSRDLEDQKGGLYNYWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTISHFRIPPASMSSFDILSVAVFIFFYRRVIDPLVGKLKKTSSKGLTELQRMGIGLVIAVMAMVSAGIVECYRLKYAKPGCPHCSGTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLLVSMVMKISTEDHMPGWIPGNLNRGHLDRFYFLLAALTSIDLVVYIACAKWFKSIQLEGKYEENDKPGNFKV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1720 444 SUPERFAMILY MFS general substrate transporter 2 431 IPR036259 -
Ssu6g1720 444 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 434 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1720 444 Pfam POT family 3 383 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1720 444 Gene3D MFS general substrate transporter like domains 1 431 IPR036259 -
Ssu6g1720 444 PANTHER PEPTIDE TRANSPORTER 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1720 Ssu-Chr6 28961176 28962761 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1720 3 437 Organic Solute Cotransporters AT1G32450 76.712 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1720 K14638 - gmx:100808276 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2644 2 86375211 86381752 Ssu6g1720 6 28961176 28962761 PCT