Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1717 atgatATTAATGAAATGCATCATAAAACGGTTATTTTGCAGGGTAACAATTGGCACATGGAATGTTGCTGGAAGACCTCCAAGTAAGGATCTTGATATTGAGGACTGGCTTTGTACCAATGAACCAACAGATATTTACATTATTGGTTTCCAAGAGGTAGTCCCCTTGAATGCTGGAAATGTTCTTGGGGCAGAAGATAATACACCCATCCGAAAATGGGAAGCAATCATTCGAAGAACTCTTAACAAATCTTCTGAACCTGAAAGCAAGCACAAAAGCTACAGTGCCCCTCCTTCTCCTGTTCTAAGAACTTCTGTTTCTGCTAATGTTCTAGCAGACAGTATAGATGTTAATTCACTAGACACAATGAATGGGGAGTATTTAGGAACTTTTGACAATGATGTGCTAGAGCAAGAGGAAGTAAAAAGCATAATTGGTATAGGAAGGAATTTAcagttgaagaaaataaatgacattgaTATTCAGACAATACTTGACTGGCCTGAACGTCCATTAGATGCAATCCCACATCCTGATTCCAGTCCAAAATTGCGTAGAGTACTAAGCAGTTCAGCCAGAATTGGCTTTAACTGGACAGAGAATGCTTCAAAATATGGGGGTGTAATGAAACGGTCACACCATAGTTCTGGAAATTTGGGCTTGTTATGGAAAGAGCAGCAAGTGATGCCTGAAGAAGTAATTGATACCCTTGGTGACTTATCTGACATGTTATCGGATGAGGAAGATGATGCTTTTTTTGAATTACCAAATGACAAAGAAGAGAATGGAACAGGTACCGTGAAATCTCATCCTAAGTATGTCCGGATTGTCAGCAAGCAGATGGTAGGAATATATGTGTCTGTTTGGGTGCAAAGGAGGTTGAGAAGGcacattaataaattgaaagtttCTCCAGTTGGAGTTGGTTTTATGGGCTACATGGGAAACAAGGGGTCTGTTTCAGTTAGTATGTCTCTCTTTCACTCACGCTTCTGCTTTGTTTGTTCCCATCTGACTTCTGGTCAGAAGGATGGGGCAGAAATAAGACGAAACTCAGATGTTCATGAAATTCTTCGCCGCACTTGTTTCTCATCCGTCTTTGATACAGATCAACCACAAACAATACCATCTCATGATCAAATTTTCTGGTTTGGGGATTTGAATTATCGTGTCAATATGATGGATGGGAAGGTTCGAAAGCTGGTATCTCTAAAGAAATGGGATGAACTGATGAATTACGATCAGCTAAGTAATGAATTACGTAGTGGGCATGTGTTTGATGGATGGAAAGAGGGGTTGATAAACTTCCCACCCACTTACAAGTATGAATTTGATTCTGATAAATATATTGGCGAGAACCCaaaagaaggggaaaagaaGAGATCCCCAGCCTGGTGTGATCGTATATTGTGGCTAGGAAAAGGAATAAAGCAACTTCAATACAGGCGTGCAGAAAATAAGCTCTCAGATCATCGACCAGTTAGTTCAATATTCTCGGTTGATGTTAAAGTATTTGACCACCGCAAACTACGAGCACTAAATTTCACAAAAGCAGCAGTACACCCTGAGGTTTTCCTTAAAGAAATGGGGATTTTTCATATTAGATATCCACCAAAGAATGGGATCTGCAAAAATACCAATTACTGGTAA 1650 0.3848 MILMKCIIKRLFCRVTIGTWNVAGRPPSKDLDIEDWLCTNEPTDIYIIGFQEVVPLNAGNVLGAEDNTPIRKWEAIIRRTLNKSSEPESKHKSYSAPPSPVLRTSVSANVLADSIDVNSLDTMNGEYLGTFDNDVLEQEEVKSIIGIGRNLQLKKINDIDIQTILDWPERPLDAIPHPDSSPKLRRVLSSSARIGFNWTENASKYGGVMKRSHHSSGNLGLLWKEQQVMPEEVIDTLGDLSDMLSDEEDDAFFELPNDKEENGTGTVKSHPKYVRIVSKQMVGIYVSVWVQRRLRRHINKLKVSPVGVGFMGYMGNKGSVSVSMSLFHSRFCFVCSHLTSGQKDGAEIRRNSDVHEILRRTCFSSVFDTDQPQTIPSHDQIFWFGDLNYRVNMMDGKVRKLVSLKKWDELMNYDQLSNELRSGHVFDGWKEGLINFPPTYKYEFDSDKYIGENPKEGEKKRSPAWCDRILWLGKGIKQLQYRRAENKLSDHRPVSSIFSVDVKVFDHRKLRALNFTKAAVHPEVFLKEMGIFHIRYPPKNGICKNTNYW 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1717 549 Gene3D Endonuclease/exonuclease/phosphatase 5 108 IPR036691 -
Ssu6g1717 549 SUPERFAMILY DNase I-like 14 511 IPR036691 -
Ssu6g1717 549 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 10 528 IPR045849 GO:0004445|GO:0046855
Ssu6g1717 549 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 10 528 - -
Ssu6g1717 549 Gene3D Endonuclease/exonuclease/phosphatase 235 523 IPR036691 -
Ssu6g1717 549 SMART i5p_5 196 506 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1717 Ssu-Chr6 28919134 28923369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1717 266 529 Acyl Lipid Metabolism Gene Families AT1G65580 30.519 2.44e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1717 K24221 - gmx:100807214 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2648 2 86400671 86404886 Ssu6g1717 6 28919134 28923369 PCT