Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2648 ATGAAGGCAAAGAGAGGAAAACGTTCCGAGGCCTTCTGGCCTTCCATTGTGATGAAAAAATGGTTAAACATCAAGCCTAAGGTGAATGATTTTAGTGAAGATGAAGTGGACACTGAAACTGAGAGTGAAGATGATGCTTGCTCCATTAGAGACTCAAGAATGCGTGTGCGTGAAGATAATCCACTTAGAACACAAGGGATTCAGTCCATGTTCCCAAGTCAAACATCAGATGTGTTTTGTAAAGGCCAGAAGACAAGACACAGAAGGGGAAAATCAGAAACTCTGCGTGCTCAGTACATAAACACGAAGGAAGTGAGGGTAACCATTGGCACTTGGAATGTTGCTGGAAGACATCCATATGAAGATCTTGAGATTGATGATTGGCTTTATACTGAAGACCCAGCTGATATTTACATTCTTGGTTTTCAGGAGGTAGTTCCACTGAATGCTGGAAATGTGCTAGGAGCAGAGGATAATACACCTATCCCAAAATGGGAGGCAATCATTCGAAGATCTCTAAACAAATCTTCTGAGCCTGACAGTAAACTCAAAAGCTACAGTGCCCCTCCTTCTCCAGTGTTAAGAACTTCTTCTGCTGCTGATGTTCTGGCAGACACTATAAATGCTGATAATCCAATTGATATGATGATTGAGGAGTATGTAGGAGCAGTTGACAATAATGAGGTGGAACAGCAGGAAgtgaaaaacataattgatataGAGAATAACTTACAGTTGAGGAGAATATATGGCATTGATATTGACTGGCCTGAACGTTCATTAGATGCAGTCCCCCAAATTGTTGATTCCAATTCAAAGTTGCGGAGAGTACTAAGCACCTCAGCCAGAATTGGCTTTAACAGAACTGAGAGTACTTTGATATATGGTGTTGGATTGAAACGTTCACACCACAGTTCTGGAAATTTGGGCTTGTTAAGGGAAGAACAGCAAGTGATACCTGAAGTAGTTGATTCCTTAGCTGATGTCTCTGATGTGTCATCAGCTGAGGATGATGATACTTTGATTGAATTACCGAGTACCAAGAAATCATGTTCAAGTCCAAGGTATGTCCGGATTGTGAGCAAGCAGATGGTAGGGATATATGTATCTGTTTGGGTGCAGAGGAGGTTGAGAAGGcacattaataatttgaaagtttCCCCAGTTGGAGTTGGTATTATGGGCTACATGGGAAACAAGGGGTCAGTTTCGATTAGTATGTCTCTCTTTCAGTCACGTCTGTGCTTTGTTTGTTCCCATTTGACTTCTGGTCAGAAGGAAGGGGCGGAACATAGGCGAAACTCTGATGTTCACGAAATTCTGAGACGCACTTGCTTCTCATCTGTCTTTGATGCAGATCAACCACAAACAATCCCATCTCATGACCAGATTTTCTGGTTCGGGGATTTGAATTATCGTATCAATATGTTGGATGCTGAGGTTAGAAAATTAGTGGCTCTAAAGAAGTGGGATGAGCTGATGAGTTATGATCAGCTAAGCAAAGAGTTGCGTATTGGGCATGTATTTGATGGATGGAAAGAGGGGTTGATAAACTTCCCACCCACTTACAAGTATGAAATTAACTCTGATAGATATGTCGGTGAGAGCccaaaagaaggggaaaaaaggaGATCTCCAGCCTGGTGTGATCGTATATTGTGGCTAGGAAAAGGAATAAAACAACTACAATATGGACGTGCAGAGATTAAGCTCTCAGATCATAGACCAGTTAGTTCAATCTTCTTGGTTGAAGTTGAAGTATTTGACCATCGCAAGCTAAAAAGAGCTCTAAATTTCACTAGTGCAGCGGTACACCCAGAGATCTTCCTTGATGAAGATGGAGAAATATAA 1851 0.4046 MKAKRGKRSEAFWPSIVMKKWLNIKPKVNDFSEDEVDTETESEDDACSIRDSRMRVREDNPLRTQGIQSMFPSQTSDVFCKGQKTRHRRGKSETLRAQYINTKEVRVTIGTWNVAGRHPYEDLEIDDWLYTEDPADIYILGFQEVVPLNAGNVLGAEDNTPIPKWEAIIRRSLNKSSEPDSKLKSYSAPPSPVLRTSSAADVLADTINADNPIDMMIEEYVGAVDNNEVEQQEVKNIIDIENNLQLRRIYGIDIDWPERSLDAVPQIVDSNSKLRRVLSTSARIGFNRTESTLIYGVGLKRSHHSSGNLGLLREEQQVIPEVVDSLADVSDVSSAEDDDTLIELPSTKKSCSSPRYVRIVSKQMVGIYVSVWVQRRLRRHINNLKVSPVGVGIMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGQKEGAEHRRNSDVHEILRRTCFSSVFDADQPQTIPSHDQIFWFGDLNYRINMLDAEVRKLVALKKWDELMSYDQLSKELRIGHVFDGWKEGLINFPPTYKYEINSDRYVGESPKEGEKRRSPAWCDRILWLGKGIKQLQYGRAEIKLSDHRPVSSIFLVEVEVFDHRKLKRALNFTSAAVHPEIFLDEDGEI 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2648 616 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 7 612 IPR045849 GO:0004445|GO:0046855
Ssu2g2648 616 PANTHER TYPE I INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2 7 612 - -
Ssu2g2648 616 Gene3D Endonuclease/exonuclease/phosphatase 276 607 IPR036691 -
Ssu2g2648 616 Gene3D Endonuclease/exonuclease/phosphatase 85 189 IPR036691 -
Ssu2g2648 616 SMART i5p_5 273 589 IPR000300 GO:0016791|GO:0046856
Ssu2g2648 616 SUPERFAMILY DNase I-like 96 601 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2648 Ssu-Chr2 86400671 86404886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2648 356 554 Acyl Lipid Metabolism Gene Families AT1G05630 33.628 7.42e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2648 K24221 - ccaj:109800886 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2648 2 86400671 86404886 Ssu6g1717 6 28919134 28923369 PCT