Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1712 ATGTGTTTCTTCCAATGCCTTTGCTCTTCTTTGCGGGATCCTGACCGTTTTTCGTTATCTTCTGAATCAGATAGCAGCTGGGTGAATGCAACCAAGTTCTTAACAGGTGCCTCAGCTGTTGGAAGCATTGCCATTCCAACCATATTAAAGCATGCTGGTGTTATAGGTTGGGGAGCCCTTGCAATGGAACTCTCTTCCTTCTTTGTGTTTGTATTTGCCATAATGTGTTACATACGGATGAATGATGAAGATGATTATAGTATTCTTTGA 270 0.4148 MCFFQCLCSSLRDPDRFSLSSESDSSWVNATKFLTGASAVGSIAIPTILKHAGVIGWGALAMELSSFFVFVFAIMCYIRMNDEDDYSIL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1712 89 Pfam Vacuolar protein sorting 55 3 85 IPR007262 -
Ssu6g1712 89 PANTHER LEPTIN RECEPTOR-RELATED 15 86 IPR007262 -
Ssu6g1712 89 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG 15 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1712 Ssu-Chr6 28792398 28792829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1712 15 85 EF-hand Containing Proteins AT1G32410 67.606 2.21e-29 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1712 - - gmx:100775400 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2652 2 86470744 86471508 Ssu6g1712 6 28792398 28792829 PCT