Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1696 atggGTGTAAGGAACGATAACAAACGCGAGACTACTTCTCAAGAAAAGCAAACTCCGCGCGAGGAAGAAGAGAAgctaaaggaaaaagagaaagaaggagcGAGCAGAATAAGGTGTCTCTCTTGGACTGATTCGCTTCAATCGCATCTCTTCCCCACCTCTACTACTCTCCCATCTATTCATTTATCTATCTCTTCTCTCTCCCCTTCAATACAACAcacaaggaagaagaagaagaagaaaaaaaaaaaaagtggacaCAGTTATTTGTTCATGGCCGTTCAAGCTCAATATCCATCCAACGTCCTTTTTCTAAACAGAAACGGGCAAGAAGCTCATGAATACTCATTGCAGCCACAGCCGGGAGGCCTCCTGAACCAGCCCCATATGATATACAACAGCGACAATGGAAgtaacaacaacaataataacaattctcggaagagagggagagaagacACAGCAGTTGGCAACACAATCACAACGGCCTCTAACGCTATCAATCCTTTCTCTTTACAATCTCAGCCTCCGCAGCTTATTCACCTTTCTCAGCTCCATAATCACCAACAAAATGTAGTCTCCACTGGCCTACGCTTGTCCTTCGATGACCACAACcttcatcaacaacaacaaagactaccacttcaacaacatcaatcacaacaacaacatggGTCTCCCTCTTCCGCTTTCTTATCTCTATTATCCCAAGGCTTGGCTTCTCAAATCAAACAACAGCGCGATGAAATTGATCAATTGCTCCAAGCCCAGGGAGAGCAACTGCGGCGGGCATTGGCGGAGAAGAGGCAGAGGCATTACCAGGCGCTGCTGGGCGCGGCGGAGGAGGCTGTGGCGCGGCGGCTCCGAGAGAAGGAAGCCGAGGTGGAGAAAGCCACGCGCAAGAACGCGGAGCTAGAAGCACGCGCGGCCCAGCTCAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCCGGGCCCAGGAAGCGACCGCGGCCTCGCTCCAGGCCCAACTGCAGCAGACCATAATGTGTCACGGCGGCGAGGACCCCGCCGCCGGCGTGTCGTGCGCCGTGGAAGGCCAGGCGGAGGACGCCGAGTCGGCCTACGTGGACCCCGAGCgcgtggtggtggcggtggcgcGTCCCAAATGCAGAGGGTGCGGGAAGCGCGTGGCCTCGGTCGTGGTTTTGCCGTGTCGGCACTTGTGCATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCCGTTTGTCTCACCCCTAAGAATTCAACCGTTGAAGTTTTTCTCTCATAA 1293 0.4656 MGVRNDNKRETTSQEKQTPREEEEKLKEKEKEGASRIRCLSWTDSLQSHLFPTSTTLPSIHLSISSLSPSIQHTRKKKKKKKKKSGHSYLFMAVQAQYPSNVLFLNRNGQEAHEYSLQPQPGGLLNQPHMIYNSDNGSNNNNNNNSRKRGREDTAVGNTITTASNAINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDHNLHQQQQRLPLQQHQSQQQHGSPSSAFLSLLSQGLASQIKQQRDEIDQLLQAQGEQLRRALAEKRQRHYQALLGAAEEAVARRLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQTIMCHGGEDPAAGVSCAVEGQAEDAESAYVDPERVVVAVARPKCRGCGKRVASVVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1696 430 Coils Coil 236 256 - -
Ssu6g1696 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 430 IPR013083 -
Ssu6g1696 430 MobiDBLite consensus disorder prediction 133 152 - -
Ssu6g1696 430 Coils Coil 281 322 - -
Ssu6g1696 430 MobiDBLite consensus disorder prediction 210 229 - -
Ssu6g1696 430 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 92 429 - -
Ssu6g1696 430 Pfam Zinc finger, C3HC4 type (RING finger) 382 422 - -
Ssu6g1696 430 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 92 429 IPR017066 -
Ssu6g1696 430 MobiDBLite consensus disorder prediction 1 34 - -
Ssu6g1696 430 ProSiteProfiles Zinc finger RING-type profile. 383 417 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1696 Ssu-Chr6 28563477 28565133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1696 383 428 Miscellaneous Gene Families AT2G21380 32.609 7.06e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1696 K19042 - gmx:100788924 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2669 2 86839603 86840823 Ssu6g1696 6 28563477 28565133 PCT