Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2669 ATGGCCGTTCAAGCTCAATACCCCTCCAACGTACTCTTCCTAAACAGGTTTGCATGTTCTTCCTTCATTTCTAATTCTCAATCTGACGCAGATGCAACTACGATTAACAAATGCATTTGCAACAGCAAAAGGGGGCAAGAAGCACATGACTATTCATTGCAATCTCCGCCGGGAGAACTCCTTGATCAATCCCATATGTTATTCAACAACGCAGGTACTAATTCtcgaaaaagaggaagagaaacaACAACAGTCACCGGAATTGCGCCTAACGTTATCAATTCATTCCCTCTGCAATCCCAGACTCCACAGCTCATAGACCTTACCCAACTTCACAATCAAAATGTAGTCTCCACCGGCCTACGCTTATCCTTTGGtgaccaacaacaacaaagacaaCAATTACATCAACAACAACATGGGTGTCACTCAAATACTTTCGTATCTCTATTATCCGAAGGCTTGTCCTCGCAAATCAAACAACAGCGTGACGAAATAGACCAATACCTTCAAGCCcagGGGGAACAAATGCGGCGGGTATTAGAGGAGAAGAGGCAGAGACATTATCGGACGCTGCTAAGGGCAGCGGAGGAATCAGTGCTGCGGCGGCTGAGGGAGAAGGAAGCGGAGGTGGAGAAAGCGACGCGACGGAACGCGGAGTTGGAGGCACGCGCGGCGCAGCTTAGCGTGGAGGCGCAGCTTTGGCAGGCGAAGGCGAAGGCACAGGAAGCGAGGGCCGCGTCGTTGCAGGCGCAGCTGCAGCAGGCTATGATGAGCGGCGGGGGGGAGGACGGTGGGGGAGGGCTATCGTGCGCCGTGGGCGACGCGGAGGATGCGGAGTCAGCGTACGTTGACCCAGAGCGAGTGGGTCCCAAATGTAGAGGGTGCGCGAAACGGGTGGCTTCGGTGGTGTTGTTGCCGTGTCGCCACCTGTGCATCTGCGCCGAATGCGATAGGCATTTTCGGGCGTGCCCCGTTTGCCTCACCGTAaaaaattcaaccattgaagTCTATCTATCTTAG 1023 0.5034 MAVQAQYPSNVLFLNRFACSSFISNSQSDADATTINKCICNSKRGQEAHDYSLQSPPGELLDQSHMLFNNAGTNSRKRGRETTTVTGIAPNVINSFPLQSQTPQLIDLTQLHNQNVVSTGLRLSFGDQQQQRQQLHQQQHGCHSNTFVSLLSEGLSSQIKQQRDEIDQYLQAQGEQMRRVLEEKRQRHYRTLLRAAEESVLRRLREKEAEVEKATRRNAELEARAAQLSVEAQLWQAKAKAQEARAASLQAQLQQAMMSGGGEDGGGGLSCAVGDAEDAESAYVDPERVGPKCRGCAKRVASVVLLPCRHLCICAECDRHFRACPVCLTVKNSTIEVYLS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2669 340 ProSiteProfiles Zinc finger RING-type profile. 293 327 IPR001841 -
Ssu2g2669 340 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 339 - -
Ssu2g2669 340 Coils Coil 152 172 - -
Ssu2g2669 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 340 IPR013083 -
Ssu2g2669 340 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 339 IPR017066 -
Ssu2g2669 340 PIRSF SBP1_RNase_bind 27 340 IPR017066 -
Ssu2g2669 340 Coils Coil 194 259 - -
Ssu2g2669 340 Pfam Zinc finger, C3HC4 type (RING finger) 292 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2669 Ssu-Chr2 86839603 86840823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2669 293 329 Miscellaneous Gene Families AT2G21380 40.541 6.64e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2669 K19042 - gmx:100779548 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2669 2 86839603 86840823 Ssu6g1696 6 28563477 28565133 PCT