Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1682 ATGTCTAACATCCACACTGCAACCAACAGCATGAAAAAGCTGTCAAGTTATTTGCATTCCCTATCCCAAACTCCTCACAGGCTTAGAAAAAGAATGCTAGCCACTTGGACCCCGGACCAGGAATTCAACCAAGCGAGGCACAGATCTGGGGCTGACATGAAGAGGAAGCTCAAGTGGTATGATCTTGTAGCTCTTGGTGTTGGAGGAATGCTTGGTGTTGGAGTGTTTGTCACAACTGGCTCTGTTGCCCTTCACCACTCTGGTCCCTCAGTCTTCATTTCCTATATCATAGCAGGAATTTCAGCCCTTCTCTCCTCTTTGTGTTACACTGAATTTGCTGTTCAAGTCCCAGTTGCAGGAGGAGCTTTCAGTTATTTAAGATTAACCTTTGGGGAATTCTTGGGATATTTTGCTGGGGCAAATATATTAATGGAGTATGTGTTCTCAAACGCTGCCGTGGCAAGGAGCTTTACAGAATATTTGAGCATTGCGTTTGGAGAAAATGATCCAAATGTGTGGAGAGTGGAAGTCCATGGATTGCCAAAGGATTATAACATGATGGATTTTCCAGCTGTGGCTCTCATTCTTCTTCTCACTCTCTGCTTGTGTCATAGTACAAAGGAAAGCTCCGTGTTGAACCTCATTATGACAGCCTTCCATGTGATTTTCTTTGGATTCATCATAATCGCCGGTTATTGCAATGGAAGTGCCAAAAACTTGGTTAATCCAAAAGGACTAGCTCCTTTTGGTGTTAGAGGTGTTCTTGATGGAGCAGCAATAGTCTACTTTAGTTATATAGGCTATGACTCAGCTTCAACCATGGCTGAGGAGGTCAAAGACCCCTTTAAGAGCCTACCCATTGGAATCGTGGGTTCAGTTCTTATAACCACTTTGCTTTATTGCCTAATGGCTCTGTCTTTGTGCATGATGGTTCCCTATGACAAGATATCAGGGAAAGCATCGTATTCAATAGCTTTTCTCAAAATTGGTTGGAGTTGGGCGAGCAACCTTGTTGGGGCAGGTGCAAGTTTGGGTATAGTGGCTTCTCTCTTGGTGGCCATGTTAGGCCAAGCAAGATACCTTTGTGTTATAGGAAGGGCACGGTTGGTGCCATCTTGGTTAGCCAAAGTGCATCCTTCAACAGGCACCCCATTGAACGCCACAGTATTTTTGGGACTTTGCACAGCATCTATTGCGCTATTCACCGAGCTTGACATTATAATTGAGTTGATCAGCATCGGCACACTGTTGGTGTTCTACATGGTAGCCAATGCTCTTATATACCGTCGATATGTAATCACTGGCCATACCCCACCTTTGCACACTCTCTTGttcctctttctcctttctctaaGTGCACTATGCTTCTCCATAGCGTGGAAATTCAAGCAGCAGTGGTGGGGTCTATTACTTTTTGGTGGGTTTATGATCACCATCACTGCCTTCTTTCAACACGTGGTGCCTAATAGTAACCTTGCCCAAGATGCTCAACATTGGTCCGTGCCATTCATGCCATGGCCACCTGCCATGTCCATCTTTCTTAACGTTTTCCTCATGACCACGCTCAAAATCCTCGCTTTCCAACGCTTTGCCATATGGGCATGCTTCATTACCATCTTCTATGTGCTCTATGGCGTTCACAACACTTATGAGGCAGAGGAGATTGAGACGGGTGGTCTTAATGATGAAGTGAATTCAAGTGCACACAACTTACAAACTAAGGTAGAAATTCAAGTGCATTAA 1743 0.4406 MSNIHTATNSMKKLSSYLHSLSQTPHRLRKRMLATWTPDQEFNQARHRSGADMKRKLKWYDLVALGVGGMLGVGVFVTTGSVALHHSGPSVFISYIIAGISALLSSLCYTEFAVQVPVAGGAFSYLRLTFGEFLGYFAGANILMEYVFSNAAVARSFTEYLSIAFGENDPNVWRVEVHGLPKDYNMMDFPAVALILLLTLCLCHSTKESSVLNLIMTAFHVIFFGFIIIAGYCNGSAKNLVNPKGLAPFGVRGVLDGAAIVYFSYIGYDSASTMAEEVKDPFKSLPIGIVGSVLITTLLYCLMALSLCMMVPYDKISGKASYSIAFLKIGWSWASNLVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPSWLAKVHPSTGTPLNATVFLGLCTASIALFTELDIIIELISIGTLLVFYMVANALIYRRYVITGHTPPLHTLLFLFLLSLSALCFSIAWKFKQQWWGLLLFGGFMITITAFFQHVVPNSNLAQDAQHWSVPFMPWPPAMSIFLNVFLMTTLKILAFQRFAIWACFITIFYVLYGVHNTYEAEEIETGGLNDEVNSSAHNLQTKVEIQVH 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1682 580 Pfam Amino acid permease 57 435 IPR002293 GO:0016020|GO:0022857|GO:0055085
Ssu6g1682 580 Pfam C-terminus of AA_permease 499 548 IPR029485 -
Ssu6g1682 580 Gene3D Amino acid/polyamine transporter I 52 497 - -
Ssu6g1682 580 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 14 562 - -
Ssu6g1682 580 PANTHER CATIONIC AMINO ACID TRANSPORTER 7, CHLOROPLASTIC-LIKE 14 562 - -
Ssu6g1682 580 PIRSF AA_transporter 34 501 - -
Ssu6g1682 580 PIRSF AA_transporter 493 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1682 Ssu-Chr6 28260213 28264949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1682 144 553 Organic Solute Cotransporters AT3G10600 51.306 1.21e-145 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1682 - - gmx:100790787 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2683 2 87016247 87020491 Ssu6g1682 6 28260213 28264949 PCT