Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1614 ATGACTTCCCCTATGTCGTTGTTGCTCTTGCTCACTCTCCTCTGTGTTTCCCACCCCTCATGGCAAATGGTGCTCTTGCCTCTAACACACACTCTTTCCCAAACCCAATTCAACAGTACCCACCACCTCCTCAAATCCACCTCCAACCGTTCCGCCGCCCGCTTCCGCCGCCAACTCTCTCTCCCCCTCTCCCCGGGCAGCGACTACACTCTCTCCTTCAATCTGGGCCCCCAGGCCCAGACCATAACCCTCTACATGGACACCGGCAGCGACCTCGTCTGGTTCCCCTGCGCCCCCTTCAAGTGCATACTCTGCGAGGGCAAGCCCAACGAGCCCAACGCTTCTCCCCCCACCAACATCACCCAAAGCGTCGCCGTTTCATGCAAGTCCCCCGCATGCTCCGCAGCGCACAACTCAGCCTCGCACTCCGATCTCTGCGCAATGGCTCGTTGCCCCCTCGAATCCATCGAAACCGCCGATTGCGCCTCGTTCAAGTGTCCACCATTTTACTACGCCTACGGCGACGGAAGCTTAATCGCGCGTTTATATCGTGACAcgctctctctttcttctctgtCTCTCAGAAACTTCACGTTCGGTTGCGCTCACACCACCCTCGCCGAACCCACCGGAGTCGCCGGATTCGGCCGAGGTTTGCTCTCTCTACCGGCGCAGCTAGCCACACTCGAGCCCCAACTCGGAAACCGGTTTTCGTATTGTTTGGTTTCCCACTCGTTCGACTCGGAGCGGGTTCGAAAACCGAGTCCACTCATCCTCGGCCGTCacgaggagaaggagaagattgGCGGCGGTGGTGGAATGGATGAGTTTGTGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTATTTTTACTGCGTTGGCTTAATCGGAATCTCCGTCGGGAAAAGGTCCATTCCGGCGCCGGAGATGCTGCGGCGGGTGAACCAACGCGGCGACGGCGGGGTCGTGGTGGACTCCGGCACGACGTTCACGATGTTGCCGGCGGGGTTTTACGACTCGGTGGTGGCCGAGTTCGAGCGCCGAGTCGGGCGAGTCAACGAGCGCGCGCGTAAGATTGAGGAGAAAACCGGACTCGCGCCGTGTTATTATTTGAACGCGGGGGCGGAGGTGCCGGCTGTGACGCTGCGTTTCGCGGGGGGGAATTCGAGTGTGGTGCTGCCTAGGAAGAACTATTTCTACGAGTTTTTGGACGGTGGAGATGGAGCGAGGGATAAAAGGAGGGTGGGGTGTTTGATGCTGATGAACGGTGGGGACGAGGCTGAGTTGAGCGGTGGGCCCGGGGCCACACTCGGAAATTACCAGCAGCAGGGGTTCGAGGTTGTGTATGACCTGGAAGAGAAGCGCGTGGGGTTCGCCAGGAGGCAGTGCGCGTCGCTTTGGGAGAGACTCAATCACGACAAAAACTAG 1431 0.573 MTSPMSLLLLLTLLCVSHPSWQMVLLPLTHTLSQTQFNSTHHLLKSTSNRSAARFRRQLSLPLSPGSDYTLSFNLGPQAQTITLYMDTGSDLVWFPCAPFKCILCEGKPNEPNASPPTNITQSVAVSCKSPACSAAHNSASHSDLCAMARCPLESIETADCASFKCPPFYYAYGDGSLIARLYRDTLSLSSLSLRNFTFGCAHTTLAEPTGVAGFGRGLLSLPAQLATLEPQLGNRFSYCLVSHSFDSERVRKPSPLILGRHEEKEKIGGGGGMDEFVYTPMLENPKHPYFYCVGLIGISVGKRSIPAPEMLRRVNQRGDGGVVVDSGTTFTMLPAGFYDSVVAEFERRVGRVNERARKIEEKTGLAPCYYLNAGAEVPAVTLRFAGGNSSVVLPRKNYFYEFLDGGDGARDKRRVGCLMLMNGGDEAELSGGPGATLGNYQQQGFEVVYDLEEKRVGFARRQCASLWERLNHDKN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1614 476 SUPERFAMILY Acid proteases 64 469 IPR021109 -
Ssu6g1614 476 Coils Coil 343 363 - -
Ssu6g1614 476 Pfam Xylanase inhibitor C-terminal 292 460 IPR032799 -
Ssu6g1614 476 Pfam Xylanase inhibitor N-terminal 69 260 IPR032861 -
Ssu6g1614 476 ProSiteProfiles Peptidase family A1 domain profile. 69 460 IPR033121 -
Ssu6g1614 476 Gene3D Acid Proteases 273 469 IPR021109 -
Ssu6g1614 476 CDD pepsin_A_like_plant 69 464 IPR034161 -
Ssu6g1614 476 PANTHER BNAA01G17170D PROTEIN 1 469 - -
Ssu6g1614 476 Gene3D Acid Proteases 59 260 IPR021109 -
Ssu6g1614 476 PANTHER OS07G0603500 PROTEIN-RELATED 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1614 Ssu-Chr6 26862263 26863693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1614 39 467 Miscellaneous Gene Families AT1G44130 23.043 3.17e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1614 - - gmx:100805699 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1614 6 26862263 26863693 Ssu6g1614 6 26862263 26863693 ECH
Ssu2g2752 2 88114333 88115736 Ssu6g1614 6 26862263 26863693 PCT