Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2752 ATGGCCCCTCCCCTGTTCCTCCTCTGCTTTTTGCTCTGCATTTCACACTCACACCAAATGCTTCTTCTCCCCCTAACACACTCAATTTCCAAAACCCAATTCAACAGTACCCACCACCTTCTCAAATCCACATCCACTCGCTCAGCCTCACGCTTCCAGCGCCAACACCAAAACCCAGTCTCTCTCCCACTCTCTTCAGGAAGCGACTACACCCTCTCCTTCAACCTAGGCTCGCACCCTTCTCAATCCATAACCCTCTACATGGACACAGGCAGCGACCTCGTGTGGTTCCCCTGCGCTCCCTTCGAGTGCATTCTCTGCGAAGGCAAATTCAACGCCACGAAACCCCTAAACATCACGCGCTCCCACGGCGTCTCGTGTCAGTCCCCCGCATGTTCCGCGGCGCACTCTTCCATGTCCTCCCACGACCTCTGCGCAATCGCGCGCTGTCCCCTGGACAACATCGAAACCTCCGATTGCTCCTCCGCCGCGTGTCCACCCTTCTACTACGCTTACGGCGACGGAAGCCTCGTCGCGCGCCTCCACCGCGACACCCTCTCCATGTCCTCTCTTGTCCTTAAAAACTTCACATTCGGCTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTCGCGGGTTTCGGTCGCGGAATACTGTCCCTCCCTGCACAACTCGCTACCCTCTCTCCGCAACTCGGTAACCGTTTTTCTTACTGCTTGGTTTCTCACTCTTTCGACAGAGAACGAGTTCAAGAACCGAGTCCACTCATTCTCGGCCGCTACGATGGTTTCGGCGGGAACAGTGAGTTTGTTTACACCTCCATGCTTTGGAACCCGAAGCATCCTTATTTCTACTGCGTGGGGCTCGCTGGAATTTCCGTCGGGAGGAAGACCATTCCGGCGCCGGAGATGCTGCGGAGGGTGGACCGGAGAGGGGACGGCGGCGTGGTTGTCGATAGCGGGACCACGTTTACCATGTTGCCGGCGAGTTTGTACAACTCGGTGGTGGGCGAGTTCGAGCGGCGAGTCGGGCGAGTTCAGAAGCGCGCGAGTGAGGTGGAGGACAAAACGGGCCTCGGGCCGTGTTATTTCTTGGAGGGGTTGGTGGAGGTGCCCACAGTGACGTTGCATTTTGTGGGGAATGATTCCAGCGTGGTGCTGCCTAGGGGGAATTATTTTTACGAGTTTTTGGACGGCGCGGATGGGGTTCGGAGGAAGGTGGGGTGCATGATGCTGATGAACGGTGGTGATGACGCGGAGTTGAGCGGTGGACCCGGGGCCACACTTGGGAACTATCAACAGCAAGGGTTTGAGGTGGTGTATGACTTGGAAAAGCAGCGCGTGGGTTTCGCTAAGAGGCAGTGCGCGTCGCTTTGGGATAGTCTCAACCGTCACAAAAGCTAG 1404 0.5748 MAPPLFLLCFLLCISHSHQMLLLPLTHSISKTQFNSTHHLLKSTSTRSASRFQRQHQNPVSLPLSSGSDYTLSFNLGSHPSQSITLYMDTGSDLVWFPCAPFECILCEGKFNATKPLNITRSHGVSCQSPACSAAHSSMSSHDLCAIARCPLDNIETSDCSSAACPPFYYAYGDGSLVARLHRDTLSMSSLVLKNFTFGCAHTALAEPTGVAGFGRGILSLPAQLATLSPQLGNRFSYCLVSHSFDRERVQEPSPLILGRYDGFGGNSEFVYTSMLWNPKHPYFYCVGLAGISVGRKTIPAPEMLRRVDRRGDGGVVVDSGTTFTMLPASLYNSVVGEFERRVGRVQKRASEVEDKTGLGPCYFLEGLVEVPTVTLHFVGNDSSVVLPRGNYFYEFLDGADGVRRKVGCMMLMNGGDDAELSGGPGATLGNYQQQGFEVVYDLEKQRVGFAKRQCASLWDSLNRHKS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2752 467 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 4 464 - -
Ssu2g2752 467 Gene3D Acid Proteases 265 461 IPR021109 -
Ssu2g2752 467 ProSiteProfiles Peptidase family A1 domain profile. 70 451 IPR033121 -
Ssu2g2752 467 CDD pepsin_A_like_plant 70 455 IPR034161 -
Ssu2g2752 467 PANTHER ASPARTYL PROTEASES 4 464 IPR001461 GO:0004190|GO:0006508
Ssu2g2752 467 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 316 327 IPR001969 GO:0004190|GO:0006508
Ssu2g2752 467 Pfam Xylanase inhibitor C-terminal 285 451 IPR032799 -
Ssu2g2752 467 SUPERFAMILY Acid proteases 65 460 IPR021109 -
Ssu2g2752 467 Gene3D Acid Proteases 53 259 IPR021109 -
Ssu2g2752 467 Pfam Xylanase inhibitor N-terminal 70 246 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2752 Ssu-Chr2 88114333 88115736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2752 52 458 Miscellaneous Gene Families AT1G44130 23.963 6.53e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2752 - - gmx:100807884 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2752 2 88114333 88115736 Ssu2g2752 2 88114333 88115736 ECH
Ssu2g2752 2 88114333 88115736 Ssu6g1614 6 26862263 26863693 PCT