Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1608 ATGGCAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCAGACCGTATCCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTGACAGTTGGACAGTTTGTCTATGTTATCCGcaaaaggattaaattaagTGCAGAAAAGGCAATCTTTATCTTTGTGGACAACGTCCTTCCACCTACAGgaGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAGGATGGGTTTCTTTATGTTACTTACAGTGGAGAGAACACTTTTGGGGATCTGACTTCCCACTAG 369 0.4119 MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1608 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Ssu6g1608 122 CDD Ubl_ATG8 12 114 - -
Ssu6g1608 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Ssu6g1608 122 Gene3D - 1 117 - -
Ssu6g1608 122 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Ssu6g1608 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1608 Ssu-Chr6 26772778 26775893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1608 K08341 - gmx:100499835 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2757 2 88177726 88180367 Ssu6g1608 6 26772778 26775893 PCT