Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1597 ATGATGAACACTCTCCCTCAAACACTGGGGAAAACCATCCCAGATGCCTGGGACTACAAAGGCCGCCCAGCAGAGAGGTCCAAAACCGGTGGTTGGACTGCTGCTGCTATGATTTTAGGAGTAGAAGCATGTGAGAGGTTAACGACAATGGGAATTGCCGTAAATTTGGTGACATATTTGACGGGTACGATGCATTTGGGCAATGCTTCCGCTGCCAACACAGTCACCAACTTCCTGGGAACATCTTTCATGCTCTGTTTGTTCGGTGGTTTTGTAGCTGACACTTTTATCGGCAGATACCTCACTATTGCCATCTTCGCAACCGTTCAAGCAACTGGTGTTACAATATTGACAATATCAACCATAATCCCGAGCCTGCATCCTCCAAAATGCATATCACACGTTGCGAAACGTTGCGTGCCTGCAAGCAACATGCAGCTAATGGTGCTCTATATAGCACTGTACACCACGGCACTTGGCATTGGTGGTTTGAAATCGAGTGTGTCGGGGTTTGGCACGGATCAGTTCGATGATTCAGACAAAGGAGAGAAAAAACAGATGATAAAATTCTTCAACTGGTTCGTGTTCTTCATAAGCATGGGGACTCTGACCGCGGTGACCGTTCTCGTGTACATTCAAGACCACATAGGGAGGTATTGGGGTTATGGGATAGGAGTGTGCGCTATTCTGGTGGCTCTTATGGTGTTCTTATCAGGCACGAGGAGGTACCGGTTCAAGAAACTGGTGGGAAGCCCCCTGACTCAGATTGCGATGGTGTTCGTGGCGGCTTGGAGGAAGAGGCATTTGGAATTGCCCTCTGATTCGTCCTTGTTGTTCAACTTGGATGACGTCAAGGATGAATCTCTCACGAAGAAGCAGATGTTGCCGCATAGCAAGCAGTTCCGCTTCTTGGACAAGGCAGCAATCAAGGTCCCAAAAACAGACGGCGATGAAATCACGGCGGAGAGGAAATGGTATCTCTCAACCTTAACAGATGTTGAAGAAGTTAAAATGGTGCAGAGAATGTTACCCGTGTGGGCCACCACCATCATGTTTTGGACAGTCTACGCCCAAATGACCACATTCTCAGTAGCACAGGCGACCACCATGGACCGCCGCATCGGAAACTCGTTCCAGATCCCGGCGGCGTCTCTCACCGTCTTCTTCGTCGGAAGCGTTCTCCTAACGGTCCTCATTTACGACCGCGTCATCGCCCCCGTAGCGAGGAAAGTGACGAACAACCCGCAAGGACTAACCCCTTTGCAACGCATTGGCGTCGGGTTGGTGTTCTCAATCTTCGCCATGGTGGCAGCAGCACTCGTCGAAATAAAGCGCCTTAGAGTGGCGCATTCGCATGGTTTGACGCATAACCCTCATGCGATGCTTCCCATGAGCGTGTTCTGGTTGGTCCCACAATTCTTCTTTGTGGGGTTTGGGGAGGCACTTGCGTACATAGGGCAGCTAGATTTTTTTCTGAGGGAATGTCCCAAGGGGATGAAGACCATGAGCACAGGGTTGTTCTTGAGCACACTGTCTCTGGGGTTTTTCGTTAGTTCCTTGTTGGTGACTTTTGTGCACAAGGTGACACGCCACCGCGAGCCGTGGCTTGCGGACAATCTTAACCAGGGGAAACTCCACCACTTCTATTGGCTCTTGGCTATGTTGAGTGGTTTGAATTTGGTCGTATACTTGTTTTGTGCTAAGGGGTACGTGTACAAGGACAAGAGGCTCGCTGAGCTGGGCATAGAGTTGGAGGAGCCGGACTCTGCTTGCCATGCTTAG 1782 0.5028 MMNTLPQTLGKTIPDAWDYKGRPAERSKTGGWTAAAMILGVEACERLTTMGIAVNLVTYLTGTMHLGNASAANTVTNFLGTSFMLCLFGGFVADTFIGRYLTIAIFATVQATGVTILTISTIIPSLHPPKCISHVAKRCVPASNMQLMVLYIALYTTALGIGGLKSSVSGFGTDQFDDSDKGEKKQMIKFFNWFVFFISMGTLTAVTVLVYIQDHIGRYWGYGIGVCAILVALMVFLSGTRRYRFKKLVGSPLTQIAMVFVAAWRKRHLELPSDSSLLFNLDDVKDESLTKKQMLPHSKQFRFLDKAAIKVPKTDGDEITAERKWYLSTLTDVEEVKMVQRMLPVWATTIMFWTVYAQMTTFSVAQATTMDRRIGNSFQIPAASLTVFFVGSVLLTVLIYDRVIAPVARKVTNNPQGLTPLQRIGVGLVFSIFAMVAAALVEIKRLRVAHSHGLTHNPHAMLPMSVFWLVPQFFFVGFGEALAYIGQLDFFLRECPKGMKTMSTGLFLSTLSLGFFVSSLLVTFVHKVTRHREPWLADNLNQGKLHHFYWLLAMLSGLNLVVYLFCAKGYVYKDKRLAELGIELEEPDSACHA 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1597 593 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 89 113 IPR018456 GO:0006857|GO:0016020|GO:0022857
Ssu6g1597 593 Gene3D MFS general substrate transporter like domains 7 580 IPR036259 -
Ssu6g1597 593 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 10 585 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu6g1597 593 PANTHER PROTEIN NRT1/ PTR FAMILY 6.3-LIKE 10 585 - -
Ssu6g1597 593 SUPERFAMILY MFS general substrate transporter 22 570 IPR036259 -
Ssu6g1597 593 Pfam POT family 100 531 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1597 Ssu-Chr6 26450684 26457622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1597 4 589 Organic Solute Cotransporters AT1G12110 63.328 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1597 - - gmx:100800913 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1597 6 26450684 26457622 Ssu6g1597 6 26450684 26457622 ECH
Ssu2g2760 2 88228241 88232141 Ssu6g1597 6 26450684 26457622 PCT