Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1596 ATGCGAGTGAAGGAAATGCACCCGCTGTGCTGCATCTCGCTGGAGAGTCCGGGGATCGGGAGCGACTCGCCGGAGCCGGACGCGGCGGCGCTGTCGAGGACGAGGAGTCTTCCGGCCGGCGGATCTGACGGCATTGCGCGGCGGGGATCGGAGACCACGGTGGCCGGCGTGCTCTACAAGTGGACCAATTACGGCAAGGGATGGAGATCCCGCTGGTTCCTCCTCCGCAATGGCGTCCTCTCTTACGCCAAGATCCGGTGGCCGGAAAACCTCAATCTCCTCTCCCCGGTCGACGACGTTCGCCTCATCGGTGAAGTCACCGCCAACCGCCTCGCCAGAGACGCCGCCGCCGCCTCCATGCGCCGGAAGAATCACAAACCTCCGTCTTCGTCTTCCTCTGCCATCGTCCATctcaagATCTCGTCATTCAGAGAGAGCAAGTCAGACTATAGACGGTTCTATATATTCACAGCAACAAAGACTCTCCATCTGAGAACCGATTCGAGGAAGGACCGTGTGGCGTGGATACAAGCTTTGGTTTCAACCCGTGGATTGTATCCATTTCGACCACTCAGTGACCATCTCTCCCTCGCATCAAATCATATATCTGTATCAACGGAGAGGCTTAAGAAACTCTTGCTTGGAGAGGGTAGCAGTGAGAGCCTTGTCAAGGAGTGCGAACAAATCATGCTCGCTGAGTTCTCCGAATTACAAGAGCAACTTCAGATCCTATGTCATGAACGAGCGAATTTGCTTGATACGATAAGGCAGCTGGAGGCTGCTAATATTGAACCTGAGGCCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGGATTTTCAAGTCTAGGACGTGGAAAATATAGTGAATGCAGTACTACTGAATCATCTGATGATATTGAGAAACAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATGTCATATTATGACAGTAGAGAGTATTTTACAGAACTTGGTTTTAGGTGTGGGTCAACAGGAGCTTTGGATCCAATGAACATGTCTGGGGAAGCTAACACACAATGTAGTGATTTGGAGAACAGTCTTGTTGAGAAGACGATAAATGATTTTGGGTACCCTCAGATAGCAAGGCGAAAGAAGCTTCCAGATCCTGTTGAGAAAGAGAAGGGTGTTAGTCTTTGGTCAATTATCAAAGACAATGTGGGAAAAGATCTCACACGAGTGTGTCTTCCTGTATACTTTAATGAGCCAATATCATCTCTTCAGAAATGTTTTGAGGACTTGGagtactcttttcttttggatcGAGCTTATGAGTATGGAAAATCAGGAAACAGTCTCCTTCGGGCACTGAATGTGGCTGCCTTTGCAGTTTCTGGGTATGCATCATCTGAAGGTCGTCATTGTAAACCCTTTAATCCATTGTTAGGGGAAACTTACGAAGCTGATTATCCTGACAATGGAGTTCGCTTTTTTTCGGAAAAGGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTGAAGGTCGAGGATGGAAGTTTTGGGCTGACAGTAACATTCGTTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGACCCAGTGGGAGTTCTGACCCTGGAGTTTGACGATGGTGAAATATTTCAGTGGAGCAAGGTCACGACTACAATTTATAATCTCATCCTTGGCAAAATATATTGTGATCATCATGGGAACATGGACATCCGTGGTAATCGCCAATATTCGTGCAGACTCAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGGTGCATGGCTTTGTTGAAGATGTAATGGGAAAAAATGTTGCAACATTATTTGGCAAGTGGGATGACAGCATGTATTATGTTAATGGTGAAGTGAATGCGAAGCCAAAAGATTTCACTTTGTCAGACGCAAACTTGTTGTGGAAAAGGACTAAGCCACCTTCTAATCTCACCCGCTACAATTTGACATCATTTGCCATCACACTGAATGAGCTTACTCCCGGGCTAAAGGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGATCAGCGTCATCTAGAGAATGGGGAATACGAGAAGGCTAATGTAGAGAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGATGGCAGCCTAGGTGGTTCCAGAGAGAAGGTGAAAATGGAACGTTTCGATATATTGGCGGGTATTGGGAAGCGAGAGCTCAAGGAAGATGGAATGGATGCCCAAATATCTTCGGTGAAATTCATGAAGGCAATTTTGATCCTTTAGCCAAACATACAGGAATTAGAAGGGGTAATGCTAATCCCTTGAGTGCCTTCATTATTCCCACGCCCATTGGTTGGAGAACTAAAATGTGTCTACACCAGTTGAAAGCCATTGGCATCAAGGAATACAGCAACGATTTCagataa 2436 0.4622 MRVKEMHPLCCISLESPGIGSDSPEPDAAALSRTRSLPAGGSDGIARRGSETTVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLLSPVDDVRLIGEVTANRLARDAAAASMRRKNHKPPSSSSSAIVHLKISSFRESKSDYRRFYIFTATKTLHLRTDSRKDRVAWIQALVSTRGLYPFRPLSDHLSLASNHISVSTERLKKLLLGEGSSESLVKECEQIMLAEFSELQEQLQILCHERANLLDTIRQLEAANIEPEASALHDSEYQLTKNGFSSLGRGKYSECSTTESSDDIEKQEMEEVSDEDEMSYYDSREYFTELGFRCGSTGALDPMNMSGEANTQCSDLENSLVEKTINDFGYPQIARRKKLPDPVEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSFLLDRAYEYGKSGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDNGVRFFSEKVSHHPTVVACHCEGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRQYSCRLKFKEQAILDRNPHQVHGFVEDVMGKNVATLFGKWDDSMYYVNGEVNAKPKDFTLSDANLLWKRTKPPSNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANVEKQRLEKRQRMSRKMQENGWQPRWFQREGENGTFRYIGGYWEARAQGRWNGCPNIFGEIHEGNFDPLAKHTGIRRGNANPLSAFIIPTPIGWRTKMCLHQLKAIGIKEYSNDFR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1596 811 MobiDBLite consensus disorder prediction 302 316 - -
Ssu6g1596 811 Gene3D - 48 184 IPR011993 -
Ssu6g1596 811 ProSiteProfiles PH domain profile. 51 184 IPR001849 -
Ssu6g1596 811 SUPERFAMILY PH domain-like 51 181 - -
Ssu6g1596 811 Coils Coil 685 705 - -
Ssu6g1596 811 SUPERFAMILY Oxysterol-binding protein-like 383 765 IPR037239 -
Ssu6g1596 811 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 758 - -
Ssu6g1596 811 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 758 IPR000648 GO:0008289
Ssu6g1596 811 MobiDBLite consensus disorder prediction 290 316 - -
Ssu6g1596 811 Pfam Oxysterol-binding protein 388 741 IPR000648 GO:0008289
Ssu6g1596 811 Gene3D - 684 743 - -
Ssu6g1596 811 SMART PH_update 52 186 IPR001849 -
Ssu6g1596 811 Coils Coil 241 261 - -
Ssu6g1596 811 MobiDBLite consensus disorder prediction 15 47 - -
Ssu6g1596 811 Pfam Pleckstrin homology domain 56 179 - -
Ssu6g1596 811 Gene3D - 474 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1596 Ssu-Chr6 26422282 26433429 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1596 K20456 - gmx:100812205 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1596 6 26422282 26433429 Ssu6g1596 6 26422282 26433429 ECH
Ssu2g2761 2 88238703 88248641 Ssu6g1596 6 26422282 26433429 PCT