Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1590 ATGGAGCATCGCAAACCATTGTTACCATCCACTTCTTCCGATGACGTCGCTTCCAATCCACGCCCTCGCAAGGGCCTCGTTCTCGTCGTTTGCGGCTTGCTTTTGCTTGTTTCCCTTGTTGCCTTTGGGGGCTACAGGGCCACCAACGTGCCACATGCTGACGTGTCATCGCCAACATCGAACGATGAACACAGTCCCAAATCGGTGCCTTCTTCGAAATGGTACCCGGTTTCGCGGGGTGTTTCTTCGGGGGTGTCGGAGAAGTCATCGAGCATGTTATTGGCGGTTAAAGAAGGAGCTTCAGAAGCATTTCCTTGGGACAACAGCATGTTGTCGTGGCAGAGAACTGCTTTCCATTTCCAGCCAGAGAACAACTGGATGAAcgATCCTAACGGTCCTCTGTACTACAAGGGATGGTATCACTTTTTCTACCAATACAATCCGAACGGTGCAGTTTGGGGTGACATTGTTTGGGGCCACGCCGTGTCAAGGGACATGATCCATTGGCTTCACCTTCCACTGGCAATGGTGGCTGATCAATGGTATGACATGCAAGGTGTGTGGACAGGCTCTGCCACAATCTTACCCGATGGTCAAGTCATCATGTTATACACAGGTTCCACCAACGAGTCAGTGCAATTTTGGTGCCCACCACCAGGCATTGGTGCCAAGGACTTTCGTGACCCAACAACTGCATGGCTCACCTCTGAAGGGAAGTGGCGCATCACCATAGGGTCTAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGACACTGAGGACTTCAAGACCTATGAGCTTAAGGAGGGGCTGCTTCGTGCTGTCCCTGGCACTGGCATGTGGGAGTGTGTGGACTTCTTCCCTGTGTCCAAGAAGGCTGAAAATGGCTTGGATACCTCTATTAATGGGGCTCAGGTGAAGCATGTGATGAAGGTGAGCCTGGATGATGACAGACATGATTACTATTCAATAGGGACTTATGATGAGAAGAAAGTTTTGTTCATACCGGATGATTCTAAGAATGATGTTGGTGTTGGATTGAGGTATGACTATGGTATATTCTATGCATCCAAGACATTTTATGATCAGAGTAAGGAGAGGAGGGTTTTGTGGGGTTGGATTGGAGAGTCTGACAGTGAATATGCAGATGTGGCCAAAGGTTGGGCATCAGTTCAgAGTATTCCGAGAACTGTGAAGCTTGATAAAAAGACTGGCAGCAACTTACTTCAGTGGCCAGTTGCTGAGGTGGAGAGTTTGAGGTTGAGAAGTGATGAATTCGAAAATTTGAAGGTTAAACCAGGGTCACTGGTGTCACTAGATATTGAAACAGCCACACAGTTGGACATTGCTGCTGAGTTTGAGATAGACAAGGAAACCTTGGAGAAAACAACCGCATCCAACGAGGAGTACACGTGCAGCTCCAGTGGTGGAGCTGCACAACGTGGTCTGTTAGGACCTTTCGGTCTTTTGGTTTTGGCAGAGGACGGGCTTTCTGAGTATACCCCTGTGTATTTTTATGTCACCAAAGGAAGCGATGGAAATCTTAAGACTTCCCTTTGCTCCGATCAATCAAGGTATCCGTTTGATAAGTAA 1593 0.4796 MEHRKPLLPSTSSDDVASNPRPRKGLVLVVCGLLLLVSLVAFGGYRATNVPHADVSSPTSNDEHSPKSVPSSKWYPVSRGVSSGVSEKSSSMLLAVKEGASEAFPWDNSMLSWQRTAFHFQPENNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDMQGVWTGSATILPDGQVIMLYTGSTNESVQFWCPPPGIGAKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTEDFKTYELKEGLLRAVPGTGMWECVDFFPVSKKAENGLDTSINGAQVKHVMKVSLDDDRHDYYSIGTYDEKKVLFIPDDSKNDVGVGLRYDYGIFYASKTFYDQSKERRVLWGWIGESDSEYADVAKGWASVQSIPRTVKLDKKTGSNLLQWPVAEVESLRLRSDEFENLKVKPGSLVSLDIETATQLDIAAEFEIDKETLEKTTASNEEYTCSSSGGAAQRGLLGPFGLLVLAEDGLSEYTPVYFYVTKGSDGNLKTSLCSDQSRYPFDK 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1590 530 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 17 213 - -
Ssu6g1590 530 Gene3D Glycosyl hydrolase domain; family 43 215 422 IPR023296 -
Ssu6g1590 530 MobiDBLite consensus disorder prediction 51 72 - -
Ssu6g1590 530 ProSitePatterns Glycosyl hydrolases family 32 active site. 119 132 IPR018053 GO:0004553|GO:0005975
Ssu6g1590 530 Pfam Glycosyl hydrolases family 32 C terminal 415 510 IPR013189 -
Ssu6g1590 530 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 216 525 - -
Ssu6g1590 530 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 17 213 - -
Ssu6g1590 530 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 216 525 - -
Ssu6g1590 530 Pfam Beta-fructofuranosidase, N-terminal domain 6 111 IPR021792 GO:0004564
Ssu6g1590 530 SUPERFAMILY Concanavalin A-like lectins/glucanases 412 526 IPR013320 -
Ssu6g1590 530 CDD GH32_Fruct1-like 125 400 - -
Ssu6g1590 530 Pfam Glycosyl hydrolases family 32 N-terminal domain 119 412 IPR013148 -
Ssu6g1590 530 SMART glyco_32 119 530 IPR001362 GO:0004553|GO:0005975
Ssu6g1590 530 MobiDBLite consensus disorder prediction 52 72 - -
Ssu6g1590 530 Gene3D Glycosyl hydrolase domain; family 43 84 214 IPR023296 -
Ssu6g1590 530 SUPERFAMILY Arabinanase/levansucrase/invertase 112 413 IPR023296 -
Ssu6g1590 530 Gene3D - 423 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1590 Ssu-Chr6 26257630 26262336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1590 21 525 Glycoside Hydrolase AT1G12240 60.668 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1590 K01193 - gmx:100799487 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1590 6 26257630 26262336 Ssu6g1590 6 26257630 26262336 ECH
Ssu2g2769 2 88429933 88436484 Ssu6g1590 6 26257630 26262336 PCT