Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1564 ATGGCTGATCTCTTTGCGTGGCTCATCTCCTTCTTCATCCTTATTGCTTTAATTGTACTTGTCATTTACCAGTTAATGTGCCTGGCAGACCTggaatttgattatataaatccTTATGATTCCTCATCTCGAATAAACAAAGTGGTATTGCCTGAGTATATTACAGTAGGTGTCCTATGCTGCTTCTACCTATTAACAGGGCATTGGATAATGTCACTGATCTGTGCTCCTTACCTCTACTACAATGTGAGATTGTACAGACAAGGAAATCATCTGGTTGATGTTACAGAGATATTCAACTTGCTCCCTAAGGAAAAGAAGCAACGGCTTTTCAAACTTTTCTATCttgtttttatcctttttctatCCTTATTTTGGATGATCTACACATCTTTGGATGACCATTATGATTGA 414 0.3502 MADLFAWLISFFILIALIVLVIYQLMCLADLEFDYINPYDSSSRINKVVLPEYITVGVLCCFYLLTGHWIMSLICAPYLYYNVRLYRQGNHLVDVTEIFNLLPKEKKQRLFKLFYLVFILFLSLFWMIYTSLDDHYD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1564 137 Pfam Cornichon protein 5 125 IPR003377 GO:0016192
Ssu6g1564 137 PANTHER CORNICHON-RELATED 1 135 - -
Ssu6g1564 137 SMART Cornichon_2 4 125 IPR003377 GO:0016192
Ssu6g1564 137 PANTHER CORNICHON FAMILY PROTEIN 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1564 Ssu-Chr6 25754278 25756897 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1564 K20368 - gmx:100799061 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1564 6 25754278 25756897 Ssu2g2787 2 88691053 88692899 PCT