Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1539 ATGCTCACGGCTAGTAAACTAGCCTTCACGTTAGCATCCCCTCGTCCATGCACTGCGCCCTTGACTCCAATCTCTTCCTTGTCCCCTTCTTCTGCTGCTTCTGGTGTCCACCTCATTCAGATCAATGGACGCCACTTATGCCTCCGCCGCAGGCTGTTTCTACTTTCCCCTAAGGCCACTGCAGATCAACAAGGCAAGGTTGAAGAATTTGAAGAGGATGCTGTAGATAGTAAAATCCTCCCATATTGTAGCATagacaaaaaagagaagaaatcaaTTGGTGAACTTGAGCAAGAATTTCTTCAAGCACTGCAAGCATTCTATTATGAGGGAAAGGCTATCATGTCAAATGAAGAATTTGATAATCTCAAGGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTCATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCTTCTATGGCTTATGTATCTGGAAACCCAATTATGAATGACAAAGAGTATGATGAGTTGAAACTGAGGCTCAAGATGGAAGGGAGTGAAATTGTGGCTGAGGGTCCAAGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTATCTGTTGATTATTTAAAGATGTTCCTGCTGAACGTCCCAGCTACTGTGATTGCATTAGGATTGTTCTTCTTCCTGGATGATCTGACTGGATTTGAGATCACATATCTGCTAGAGCTGCCGGAGccttttagtttcattttcacTTGGTTTGCTGCTGTTCCCCTCATTGTGTGGATAGCTCTGTCACTAACAAATGCCATTGTAAAAGACTTCGTGATTTTAAAGGGTCCCTGTCCGAACTGCGGTACTGAAAATACCTCTTTCTTTGGGACTATACTTTCAATTTCAAGTGGTGGTTCCACCAACACTGTCAAATGCTCTAACTGTGGCACTGAAATGGTATATGATTCAACTACAAGATTGATTATATTACCAGAAGGAAGTAATGCCTAA 978 0.4131 MLTASKLAFTLASPRPCTAPLTPISSLSPSSAASGVHLIQINGRHLCLRRRLFLLSPKATADQQGKVEEFEEDAVDSKILPYCSIDKKEKKSIGELEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGNPIMNDKEYDELKLRLKMEGSEIVAEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIALGLFFFLDDLTGFEITYLLELPEPFSFIFTWFAAVPLIVWIALSLTNAIVKDFVILKGPCPNCGTENTSFFGTILSISSGGSTNTVKCSNCGTEMVYDSTTRLIILPEGSNA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1539 325 PANTHER PGR5-LIKE PROTEIN 1A 4 325 - -
Ssu6g1539 325 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 4 325 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1539 Ssu-Chr6 25288164 25291716 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1539 - - gmx:100784314 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1539 6 25288164 25291716 Ssu6g1539 6 25288164 25291716 ECH
Ssu6g1539 6 25288164 25291716 Ssu2g2805 2 88949038 88954374 PCT