Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1537 ATGGACCCCTCGTCCGGTCACCTGAATATTCCTCCGGCCGCCGACGCGGCGGCGCTCCGCCACGTGGACCGCATGATCAACTCCAACCACTACACGTCTCCTTCCAGAACAATCTACTCCGACCGGTTCATCCCCAGCAGATCTGCCTCCAAGTTCGCGCTCTTCGACATCTCCGCGCCGCCCGAGGGCCGCGACGACAGCTCCAGCGCATACACCACGCTCCTCCGCACCGCGCTGTTCGGACCCGACGCCGCCGGCGTTTCGCCGCCGCTCACGCCGGAGAAAACGGCCTCACCGGCGATGACGCTCCCCAGCCGGAATATCTTCCGGTACAAGACCGAGACGCGCCAGTCCATGCACTCGCTCTCGCCGTTTATGTGCGACGATTCGGTGCCCGGCGTTGCTCACGGCCCGGTCAAAGCTCCGAGGAAGGTTCCGAGGTCGCCTTTTAAGGTTCTGGATGCGCCTGCGCTGCAAGATGATTTTTACCTGAATCTCGTGGATTGGTCTTCGCATAATGTGTTGGCTGTTGGTCTGGGTAACTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTTACTAAATTATGTGACTTGGGGATTGATGACTGCGTTTGTTCGGTTGGCTGGGCTCAACGTGGTTCACACCTTGCTGTTGGAACTAGCAATGGTAAAGTTCAGATTTGGGATGCACATCGATGCAAGAAGATAAGATCTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCAGGGATAAGAATATTTATCAAAGAGATATCCGTGCGCAAGAAGATTTTGTCAGTAAACTATCGGGGCACAAATCAGAGGTTTGTGGACTTAGGTGGTCTTATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACTCAGCCTGTTCTGAAGTACTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCCCCTCATCTTCATGGACTTCTTGCATCTGGGGGAGGAACTGCAGACCGATGCATACGTTTCTGGAATACGACCACAAATTCACACTTAAGCTGCATGGACACTGGAAGTCAGGTTTGCAATCTTGTCTGGTCCAAAAATGTCAATGAACTTGTAAGCACACATGGCTACTCCCAGAACCAGATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACGGGCCATACCTACAGAGTTCTTTATCTAGCCATTTCTCCGGATGGACAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCCCCTAAATCACagAATACTGACAGTGAAATCGGAGCAACATCTCTTGGAAGAACTATTATTAGGTGA 1407 0.511 MDPSSGHLNIPPAADAAALRHVDRMINSNHYTSPSRTIYSDRFIPSRSASKFALFDISAPPEGRDDSSSAYTTLLRTALFGPDAAGVSPPLTPEKTASPAMTLPSRNIFRYKTETRQSMHSLSPFMCDDSVPGVAHGPVKAPRKVPRSPFKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGSHLAVGTSNGKVQIWDAHRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDFVSKLSGHKSEVCGLRWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGATSLGRTIIR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1537 468 Gene3D - 139 448 IPR015943 GO:0005515
Ssu6g1537 468 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 20 468 IPR033010 GO:0010997|GO:0097027|GO:1904668
Ssu6g1537 468 PANTHER PROTEIN FIZZY-RELATED 1 20 468 - -
Ssu6g1537 468 Pfam Anaphase-promoting complex subunit 4 WD40 domain 200 254 IPR024977 -
Ssu6g1537 468 ProSitePatterns Trp-Asp (WD) repeats signature. 430 444 IPR019775 -
Ssu6g1537 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Ssu6g1537 468 Pfam WD domain, G-beta repeat 278 313 IPR001680 GO:0005515
Ssu6g1537 468 Pfam WD domain, G-beta repeat 318 358 IPR001680 GO:0005515
Ssu6g1537 468 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Ssu6g1537 468 SUPERFAMILY WD40 repeat-like 154 450 IPR036322 GO:0005515
Ssu6g1537 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Ssu6g1537 468 SMART WD40_4 316 358 IPR001680 GO:0005515
Ssu6g1537 468 SMART WD40_4 274 313 IPR001680 GO:0005515
Ssu6g1537 468 SMART WD40_4 404 443 IPR001680 GO:0005515
Ssu6g1537 468 SMART WD40_4 233 270 IPR001680 GO:0005515
Ssu6g1537 468 SMART WD40_4 146 187 IPR001680 GO:0005515
Ssu6g1537 468 SMART WD40_4 190 230 IPR001680 GO:0005515
Ssu6g1537 468 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 444 - -
Ssu6g1537 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 239 IPR001680 GO:0005515
Ssu6g1537 468 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 444 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1537 Ssu-Chr6 25268966 25276134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1537 217 446 Miscellaneous Gene Families AT5G08390 21.459 8.48e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1537 K03364 - gmx:100780928 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1537 6 25268966 25276134 Ssu6g1537 6 25268966 25276134 ECH
Ssu6g1537 6 25268966 25276134 Ssu2g2807 2 88970636 88976168 PCT