Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2807 ATGGACGAATCGTTCACTCCTCCGCCTCCAATGTCGTCTTCTCAGCACCACCACGTCCAACGAATCATAAACTCCAATCGCTACAAGTCGCCTTCGAAAACAATCTACTCCGATAGGTTCATACCCAGCAGATCCGCTTCCAATTTCGCTCTCTTCGATATGCCCTCAGAGGACACGTGCAGTTGCAGCCCCTACGGCAACGCTCTGCGTAGTGCCCTGTTTGGACCGGACACTCCCGATAAAACGAGCCCTAATATATTCCGTTACAAAACGGAGACGAGACAGTCCATGCATTCTCACTCCCTCACGCCTTTCGCGTTCCACGATGACCTTCTCCCTGGTTGTGTCCCCAGTCAGCCTCCTCTCAAGCGTCCCCGCAAGATTCCTCCCTCGTCTTTTAAgGTTTTGGATGCGCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAACAATGTCTTGGCTGTGGCTTTGGGCAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAATTATGCGACTTGGGGATTGACGACTCCGTTTGTTCGGTTGGCTGGGCTCAACTTGGTACCTACCTGGCTGTTGGATCAAACACTGGAAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGACAGTAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCCTGGAGTTCATCATTTTTGTCTTCTGGTGGCCGGgataaaatcatttatcaaCGAGATATACGTGCACAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCTGGAGGAAATGACAACAGGTTACTTGTTTGGAATCAAAACTCAACCCAGCCCATTCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCGTGGTCTCCTCATGTTCATGGACTTCTTGCATCTGGAGGAGGAACTGCAGACCGAAGTATTCGTTTTTGGAATACAACCACAAACTCACAGTTAAACTGTATTGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTCAACGAACTAGTAAGCACACATGGGTACTCCCAGAACCAGATAATAGTTTGGAGATACCCCACCATGTCAAAGCTAGCAACTCTTACAGGCCATACCTATAGAGTTCTTTATCTTGCCATCTCTCCTGATGGGCAGACTATTGTCACTGGAGCTGGAGATGAAACTCTAAGGTTTTGGAATGTATTCCCTTCGCAAAAATCACAGAATACTGAGAGTGAAATTGGAGCATCATCTTTTGGAAGAACTATCATCAGATGA 1356 0.4639 MDESFTPPPPMSSSQHHHVQRIINSNRYKSPSKTIYSDRFIPSRSASNFALFDMPSEDTCSCSPYGNALRSALFGPDTPDKTSPNIFRYKTETRQSMHSHSLTPFAFHDDLLPGCVPSQPPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNVLAVALGNSVYLWNASSSKVTKLCDLGIDDSVCSVGWAQLGTYLAVGSNTGKVQIWDVSQGKTVRTMEGHRLRVGALAWSSSFLSSGGRDKIIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQNSTQPILKFCEHTAAVKAIAWSPHVHGLLASGGGTADRSIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSQKSQNTESEIGASSFGRTIIR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2807 451 MobiDBLite consensus disorder prediction 7 25 - -
Ssu2g2807 451 Gene3D - 122 430 IPR015943 GO:0005515
Ssu2g2807 451 MobiDBLite consensus disorder prediction 1 25 - -
Ssu2g2807 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 427 - -
Ssu2g2807 451 PANTHER PROTEIN FIZZY-RELATED 1 10 451 - -
Ssu2g2807 451 CDD WD40 150 426 - -
Ssu2g2807 451 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 296 - -
Ssu2g2807 451 SMART WD40_4 129 170 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 299 341 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 216 253 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 344 384 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 173 213 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 257 296 IPR001680 GO:0005515
Ssu2g2807 451 SMART WD40_4 387 426 IPR001680 GO:0005515
Ssu2g2807 451 SUPERFAMILY WD40 repeat-like 139 436 IPR036322 GO:0005515
Ssu2g2807 451 Pfam Anaphase-promoting complex subunit 4 WD40 domain 164 237 IPR024977 -
Ssu2g2807 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Ssu2g2807 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 305 IPR001680 GO:0005515
Ssu2g2807 451 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 10 451 IPR033010 GO:0010997|GO:0097027|GO:1904668
Ssu2g2807 451 Pfam WD domain, G-beta repeat 261 296 IPR001680 GO:0005515
Ssu2g2807 451 Pfam WD domain, G-beta repeat 302 341 IPR001680 GO:0005515
Ssu2g2807 451 Pfam WD domain, G-beta repeat 390 426 IPR001680 GO:0005515
Ssu2g2807 451 ProSitePatterns Trp-Asp (WD) repeats signature. 413 427 IPR019775 -
Ssu2g2807 451 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 222 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2807 Ssu-Chr2 88970636 88976168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2807 251 427 Miscellaneous Gene Families AT5G08390 24.157 4.68e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2807 K03364 - gmx:100785726 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2807 2 88970636 88976168 Ssu2g2807 2 88970636 88976168 ECH
Ssu6g1537 6 25268966 25276134 Ssu2g2807 2 88970636 88976168 PCT