Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1533 ATGGGCTTCCCAGCCAACGGCACCTCCGCGGAGAAGCCCCTTAAGTTCCTCATCTACGGCCGCACGGGCTGGATTGGCGGCCTCCTCGGCACCCTCTGCCGGGCCCAGGGCATCCCCTTCCAGTACGCCTCGGGCCGCCTCGAGAACCGGGCCTCCCTCCAAAGCGACATAGCCGAGGCCAAGCCCACCCACGTCTTCAACGCCGCCGGAGTCACGGGCCGGCCCAACGTCGACTGGTGCGAGTCCCACAAGGTCGAGACCATCCGAACCAACGTCGTCGGGACCCTCACTCTCGCCGACGTCTGCCGCGAAAACGGCCTCCTCCTCATCAACTACGCCACCGGCTGCATCTTCGAGTACGATTCCGCCCACCCCCTCCGATCCGGAATCGGCTTCAAGGAACACGACTCTCCCAATTTCACCGGCTCCTTCTACTCCAAGACCAAGGCCATGGTAGAGGATCTGCTCAGGAACTACGATAATGTGTGCACGTTGCGAGTGAGGATGCCTATCTCGTCCGATTTATCGAACCCGCGCAATTTCATCACGAAGATCACCCGGTATGAGAAGGTCGTGGATATTCCGAATTCGATGACTATATTGGATGAACTTCTTCCCATCTCCATTGAGATAGCGAAGAGGAATCTCACTGGGATCTGGAACTTCACGAACCCTGGAGTGGTTAGTCACAATGAAATTTTGGAGATGTACAGAGAATATGTTGACCCCAGCTTTACCTGGAAGAACTTCACTCTTGAGGAACAGGCGAAGGTGATTGTTGCGCCGAGGAGCAACAATGAGCTTGACGCGGGGAAATTGAAGAAGGAATTTCCAGAACTGTTGTCTATCAAGGACTCGCTCATTAAGTATGTATTCCAGCCAAACCAGAAGGTTAAACCTTAA 903 0.5526 MGFPANGTSAEKPLKFLIYGRTGWIGGLLGTLCRAQGIPFQYASGRLENRASLQSDIAEAKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRENGLLLINYATGCIFEYDSAHPLRSGIGFKEHDSPNFTGSFYSKTKAMVEDLLRNYDNVCTLRVRMPISSDLSNPRNFITKITRYEKVVDIPNSMTILDELLPISIEIAKRNLTGIWNFTNPGVVSHNEILEMYREYVDPSFTWKNFTLEEQAKVIVAPRSNNELDAGKLKKEFPELLSIKDSLIKYVFQPNQKVKP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1533 300 Pfam RmlD substrate binding domain 15 187 IPR029903 -
Ssu6g1533 300 CDD dTDP_HR_like_SDR_e 15 287 - -
Ssu6g1533 300 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 7 296 - -
Ssu6g1533 300 PANTHER BNAC05G13120D PROTEIN 7 296 - -
Ssu6g1533 300 Gene3D - 5 299 - -
Ssu6g1533 300 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 287 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1533 Ssu-Chr6 25167029 25168115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1533 K12451 - gmx:100781643 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1533 6 25167029 25168115 Ssu6g1533 6 25167029 25168115 ECH
Ssu6g1533 6 25167029 25168115 Ssu2g2813 2 89081188 89082168 PCT