Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2813 ATGGGTGCAGAAGCAAATGGCGGCGAGAAGCAATTGAAATTTCTGATCTACGGGCGAACCGGTTGGATTGGAGGTTTACTGGGCAAGGTGTGCGAAGAGCGAGGGATCCCATACGAGTACGGCACCGGCAGGCTCGAGAACCGGTTGTCGTTGGAAGCGGACATAACGGCGGTGAAGCCGAGCCACGTGTTCAACTGCGGCGGGTGTCACGGGCAGACCCAATGTGGACTGGTGCGAATCTCACAAGGTCGAAACCATCCGAAGCAACGTGGTCGGCACTCTCACCCTCGCCGACGTGTGCCGCCAGCGCGGCCTCGTCCTCATCAACTACGCCACCGGCTGCATCTTCGAGTGGAGGATCTGCTTCGGAACTACGAGAACGTGTGCACGCTGCGTGTCAGGATGCCGATTTCCTCAGATTTGTCGAACCCGCGGAATTTCATCACCAAGATCACTCGATACGACAAGGTTGTCGACATTCCCAACTCCATGACGATATTGGACGAGCTCCTCCCACTCTCGCTCCAGATGGCCGAGAGGAATCTCACTGGGATCTGGAATTTCACCAACCCTGGAGTGGTCAGCCACAACGAGATCTTACAGATGTACAGGGAATTCGTGGATCCAAACTTCACCTGGAAGAACTTCACCCTAGAGGAGCAGGCTAAGATTATTGTTGCTCCCAGGAGTAACAACGAGCTTGACGCGTCTAAGTTGAAGAAGGAGTTTCCTGAACTCTTGTCGATCAAGGACTCACTGATTAAGTATGTATTCCAGCCCAATCAGAAAAAAGGATGCATACTTTGA 807 0.5341 MGAEANGGEKQLKFLIYGRTGWIGGLLGKVCEERGIPYEYGTGRLENRLSLEADITAVKPSHVFNCGGCHGQTQCGLVRISQGRNHPKQRGRHSHPRRRVPPARPRPHQLRHRLHLRVEDLLRNYENVCTLRVRMPISSDLSNPRNFITKITRYDKVVDIPNSMTILDELLPLSLQMAERNLTGIWNFTNPGVVSHNEILQMYREFVDPNFTWKNFTLEEQAKIIVAPRSNNELDASKLKKEFPELLSIKDSLIKYVFQPNQKKGCIL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2813 268 MobiDBLite consensus disorder prediction 85 108 - -
Ssu2g2813 268 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 10 74 - -
Ssu2g2813 268 MobiDBLite consensus disorder prediction 84 108 - -
Ssu2g2813 268 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 114 264 - -
Ssu2g2813 268 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 255 IPR036291 -
Ssu2g2813 268 Gene3D - 104 267 - -
Ssu2g2813 268 Gene3D - 4 85 - -
Ssu2g2813 268 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 114 264 - -
Ssu2g2813 268 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 10 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2813 Ssu-Chr2 89081188 89082168 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2813 K12451 - gmx:100787499 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2813 2 89081188 89082168 Ssu2g2813 2 89081188 89082168 ECH
Ssu6g1533 6 25167029 25168115 Ssu2g2813 2 89081188 89082168 PCT