Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1516 ATGGGTCTCCGGTTTTCCTCCCAGGCATCGGAATCGGCTTCGAGGTCGAGTTTGGGCGAATTGCCCGAGAGCTGCATGGCTCAGATCATGACCTACATGGACCCTCCCCAGATTTGCAAGCTCGCCACGTTGAACCGCACGTTCCGCGGCGCTTCCTCGGCGGATTTCGTCTGGGAGTCGAAGCTGCCGCCCAATTACCCGGTCCTTCTCCGCCACATCTTCGCAGATGATTTGATATCCCATTTGGGGAAGAGGGGGATTTACGCCAGCCTTTGCGGGGTCAATTCTCTTGATGGCGGCACCAAGAAAGTTTGGCTGGATCGGAGCATGGGTAGGCTGTGTTTGTGCGTTTCGGCCAAGGGACTGTCCATAACGGGGATTGATGACAGGAGATATTGGAACCATATCCCCACTGAGGAATCAAGATTCAGCAGTGTTGCATACCTCCAGCAAATATGGTGGTTTGAAGTGGATGAGGAAGTTGAGTTCCCATTTCCAGCTGGGAGATACAGCTTGTTCTTCAGAATACATCTAGGGCGAGCCTCCAAGAGGTTTGGACGACGAGTCTGCAACACAGATCATGTTCATGGGTGGGACATAAAGCCTGTACGTTTCCAACTATGGACTTCAGATGGGCAGTATGTTACATCCCAGTGTTTTCTGAAAGGACCGGGTAAATGGATCTATTACCATGCAGGCGATTTTGTTATCGAAAATGGCAATgcatcaacaaaaattaaattctctatGACTCAAATTGATTGCACACACACTAAAGGTGGTCTCTGTGTAGATTCTGTGCTCGTATATCCAAGTGAATTCAGGAAGGTTAAAGCATTTTTAAATTACTCTTAA 855 0.4795 MGLRFSSQASESASRSSLGELPESCMAQIMTYMDPPQICKLATLNRTFRGASSADFVWESKLPPNYPVLLRHIFADDLISHLGKRGIYASLCGVNSLDGGTKKVWLDRSMGRLCLCVSAKGLSITGIDDRRYWNHIPTEESRFSSVAYLQQIWWFEVDEEVEFPFPAGRYSLFFRIHLGRASKRFGRRVCNTDHVHGWDIKPVRFQLWTSDGQYVTSQCFLKGPGKWIYYHAGDFVIENGNASTKIKFSMTQIDCTHTKGGLCVDSVLVYPSEFRKVKAFLNYS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1516 284 Gene3D - 4 152 - -
Ssu6g1516 284 Pfam Phloem protein 2 114 271 IPR025886 -
Ssu6g1516 284 PANTHER F-BOX PROTEIN PP2-A12 1 279 - -
Ssu6g1516 284 ProSiteProfiles F-box domain profile. 15 61 IPR001810 GO:0005515
Ssu6g1516 284 SUPERFAMILY F-box domain 8 74 IPR036047 GO:0005515
Ssu6g1516 284 PANTHER F-BOX PROTEIN PP2-A15 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1516 Ssu-Chr6 24849360 24851688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1516 - - gmx:100788842 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1516 6 24849360 24851688 Ssu6g1516 6 24849360 24851688 ECH
Ssu6g1516 6 24849360 24851688 Ssu4g2718 4 69559378 69561661 ECH