Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1494 ATGCCAACACCAACGCCAACGTGGCAGCACCCGCACCTGCCAAGCGTTCAACTCAGAAACCCCCTTCACGTCCCTTCCGGTTCCTCCAGCGCCAGCCAATCCTCTGCGTTCAAGACCATGGAACTTACCGTGGCGCCGCCTCGGAAAAAGAGAAGCTTCCCCGAGAAGCTAATTCCCGAAAAGGTGGCCAAGCTTGTGCCCGAGTCTGCTATTTATGCTAAGTTGCTTGAACTCGAGGCTCACGTAGATTCTGTTTTGGTTAGGAAGAAAATTGAGGTGCAGGAGGCTGTTAGAAACCCTACCTGCGTTAGGAAAACGCTTAGAATTTATGTGTATAATACTTTTTCGAATGAGGCGAAAATGGAATCTGCGAAGAATAAGGGGGACGAGCCTTCTTGGGTGCTTAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATGCTGTGGCGGATGGAATTTCACCGAAGGAAAACCCAAAATTCTCGGCTTTCTTCAAGAAGATTACTATATACTTGGATCAGGGTTTCTATCCGGATAACCATGTTGTCGTGTGGGATTGTGCTCGTTCGTCTGTGCAGCGCGATGGTTTTGAGGTGAAGAGGAAAGGGGATAAGGAATTCACTACTGTGGTTAGGATGATGTTGAATTATTCGCCTGACAAGTTTGTGGTTTCAGCACAACTGTCTAAAGTTTTAGGGATTGAGTTTGACTCGCGCGCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGCTGCAGAGCCCGAACGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAAAGGGTGTTTGGGGAGGAGAAGATGAAATTCTCAGTGGCTTCGCAGAAGATATCACAACATTTGTCACCACCGCAGCCTGTACACTTGGAGCATAAAATCAAGCTTTCTGGAAATTGCCCGTCCGGAACTACATGTTATGATGTGCAGGTTGATGTGCCTCTTCCGCTAGAGAAGGAAATGTCTGCATTCGTGGCAAGCACTCTGAGGCACAAAGAGATTGATGCTTTTGATGAACTGATCTGTGATTCCATAAAGAAGATTCATGAACATCATAGGAGGCGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCTTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTTGTTGCTGGAGATGTGAGCCATAGTGCTGAAAATGAACGACGTTCTGCATTCTACAATCAACCGTGGGTTGAGGATGCTGTTGTTCGCTACCTGACCCGGAAAAATGCTCGAAGTGATGTTCCTGGAAGCATCTGA 1311 0.4737 MPTPTPTWQHPHLPSVQLRNPLHVPSGSSSASQSSAFKTMELTVAPPRKKRSFPEKLIPEKVAKLVPESAIYAKLLELEAHVDSVLVRKKIEVQEAVRNPTCVRKTLRIYVYNTFSNEAKMESAKNKGDEPSWVLRITGRVLEDGKDAVADGISPKENPKFSAFFKKITIYLDQGFYPDNHVVVWDCARSSVQRDGFEVKRKGDKEFTTVVRMMLNYSPDKFVVSAQLSKVLGIEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSPPQPVHLEHKIKLSGNCPSGTTCYDVQVDVPLPLEKEMSAFVASTLRHKEIDAFDELICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSHSAENERRSAFYNQPWVEDAVVRYLTRKNARSDVPGSI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1494 436 MobiDBLite consensus disorder prediction 1 35 - -
Ssu6g1494 436 MobiDBLite consensus disorder prediction 21 35 - -
Ssu6g1494 436 CDD SWIB_like 224 292 - -
Ssu6g1494 436 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 19 433 - -
Ssu6g1494 436 ProSiteProfiles SWIB/MDM2 domain profile. 217 294 IPR003121 -
Ssu6g1494 436 Pfam SWIB/MDM2 domain 221 292 IPR003121 -
Ssu6g1494 436 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 19 433 - -
Ssu6g1494 436 SUPERFAMILY SWIB/MDM2 domain 212 302 IPR036885 -
Ssu6g1494 436 SMART swib_2 218 297 IPR019835 -
Ssu6g1494 436 Gene3D SWIB/MDM2 domain 215 300 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1494 Ssu-Chr6 24566351 24568645 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu6g1494 SWIB 6.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1494 K11650 - gmx:100790947 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1494 6 24566351 24568645 Ssu1g2362 1 66072318 66074555 PCT