Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2362 ATGAATAATCAAGCAAAGAATGTTGCTGCATCGTCTTTGTTTGGTCATTCTGGAATGGTCCCACAACCACACCACCCTAACCCCATTCAGCAGTGGAACCATCCAACCTCTTTACTCTCTCAGTCACAGTCACACCCTCAAACCCAATTCCCTGGTCTCTTTCAGTTTTCAGAGCCTCAATCCCAGGTCTTCGCACAAGCTCAGTATGCACAGGCACAATTGCAGTCACAGGCTGCACGTGCTCATCCACAGCCTCAAACTCAGCCTTTTGCTCACTTGCATAGTGTAAATACTAATACTGTTAGTGGTACATCATCTCCGGCAACTGGAAGTGCCAAGCGAGCAACACCGAAACCCCCAATGAGGCATCCTGGTTCGTCGAATACTAACCAATCCACGCCGATTAAGACCATGGAATTAACCCCGCCTGCTCGCCAAAAGAAGCAAACGCCAGAAAAGGTGGCTGCACTTTTGCCTGAGTCTGCTCTTTATACTCAATTGCTTGATTTTGAGGCTCAGGTGGATGCTGCCTTGGCCAGGAGAAAGATTGATATACAGGAGGCTAGGCTCCCTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCAAAAATGGATTTGGAGAATAAAAAGGCTGATGAATCTTCGTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATAGATTCTGTGACTGGAATTTCGCAGAGATCAAGTCCTTCATACCCGAAGTTCTCtgcatttttcaagaaaattacCATACACTTGGATCAAAGCCTTTATCCTGATAATCATGTCATTGTATGGGACAGTGCCCGTTCACCTATACAACAGGATGGTTTTGAGGTgaagagaaaaggaaacaaagaatTCACTGCAGTGATTGCAATAGAAATGAATTATACACCTGAGAAGTTTATGGTTTCATCACAACTGTCTAAACTTTTAGGGATTGAGGTTGAGACTCGTCCAAGGATAATAGCTTCTCTTTTTAACTATGTGAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAGAGGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTATCACAGCATTTGTCACAACCACAGCCTTTACGTCTGGAGCATAACATCAAGCTTTCTGGATATTCTCCAGCTGTATCTGCATGTTACGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATAAGTCTACATTCTTGGTAAGTCTTGAGAGTCAAAAAGAGATTGAAGCTTATGATGAAGCGATTTGCGCTTCCTTAAAGAAGATCCAGGAACATCGTAGAAGATGGGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCAGAGTTTATTGATACTTTGATTGCTTCTCAGAGCAAGGATCTAAAACTTGTTGCTCGAGATGCCAGCCATAATGTTGAAAGGGAGCTGCGTTCTGAATTCTACAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACTTGAACCGCAAAACTGCTGGAAGTGATGCTCCTGGACGCAACTAA 1590 0.4258 MNNQAKNVAASSLFGHSGMVPQPHHPNPIQQWNHPTSLLSQSQSHPQTQFPGLFQFSEPQSQVFAQAQYAQAQLQSQAARAHPQPQTQPFAHLHSVNTNTVSGTSSPATGSAKRATPKPPMRHPGSSNTNQSTPIKTMELTPPARQKKQTPEKVAALLPESALYTQLLDFEAQVDAALARRKIDIQEARLPPHVQKTLRVYVFNTFSNHAKMDLENKKADESSWSLKITGRILEDGIDSVTGISQRSSPSYPKFSAFFKKITIHLDQSLYPDNHVIVWDSARSPIQQDGFEVKRKGNKEFTAVIAIEMNYTPEKFMVSSQLSKLLGIEVETRPRIIASLFNYVKSRKLQSPNDPSFFICDPSLQRVFGEEKMDFTMVSQKLSQHLSQPQPLRLEHNIKLSGYSPAVSACYDIQVDVPFPLEKDKSTFLVSLESQKEIEAYDEAICASLKKIQEHRRRWAFFLSFSQSPAEFIDTLIASQSKDLKLVARDASHNVERELRSEFYNQPWVEDAVIRYLNRKTAGSDAPGRN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2362 529 MobiDBLite consensus disorder prediction 122 139 - -
Ssu1g2362 529 SUPERFAMILY SWIB/MDM2 domain 306 395 IPR036885 -
Ssu1g2362 529 SMART swib_2 311 390 IPR019835 -
Ssu1g2362 529 MobiDBLite consensus disorder prediction 24 53 - -
Ssu1g2362 529 Gene3D SWIB/MDM2 domain 307 392 IPR036885 -
Ssu1g2362 529 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 86 527 - -
Ssu1g2362 529 MobiDBLite consensus disorder prediction 97 112 - -
Ssu1g2362 529 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 86 527 - -
Ssu1g2362 529 MobiDBLite consensus disorder prediction 97 152 - -
Ssu1g2362 529 Pfam SWIB/MDM2 domain 314 385 IPR003121 -
Ssu1g2362 529 MobiDBLite consensus disorder prediction 14 53 - -
Ssu1g2362 529 CDD SWIB_like 317 385 - -
Ssu1g2362 529 ProSiteProfiles SWIB/MDM2 domain profile. 310 387 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2362 Ssu-Chr1 66072318 66074555 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Ssu1g2362 SWIB 1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2362 K11650 - gmx:100784907 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2362 1 66072318 66074555 Ssu1g2362 1 66072318 66074555 ECH
Ssu6g1494 6 24566351 24568645 Ssu1g2362 1 66072318 66074555 PCT