Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1488 ATGAGGAGGGATGAAGAATTCGAGCGTGTCCTTAGGTTCTTTGACGAGGATGGGGATGGGAAGATTTCACCCTGTGAGCTAAGAAACCGTTTGGGGATGATGGGTGGGGAGGTTCTGTTGAAAGAAGCAGAAATGGCCATTGAGGCGTTGGATTCGGACGGTGATGGGTTGCTGTGTTTGGAAGATTTGGTGAAGCTGATGGAGGCAGGGGGAGAGGAAGAGAAGTTGAAGGACTTGAGGGAAGCCTTTGATATGTACGACACGGAGGGGTGTGGGTTCATAACCCCAAAGGCCTTGAAGAGGATGCTCAAAAAGTTGGGGGAATCCAAGTCCACTGAGGAGTGCAAAGCCATGATAAGTCGGTTTGATTTGAACGGGGATGGCATGCTTAGCTTTGAAGAATTCAGAGTCATGATGAAGTGA 423 0.4917 MRRDEEFERVLRFFDEDGDGKISPCELRNRLGMMGGEVLLKEAEMAIEALDSDGDGLLCLEDLVKLMEAGGEEEKLKDLREAFDMYDTEGCGFITPKALKRMLKKLGESKSTEECKAMISRFDLNGDGMLSFEEFRVMMK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1488 140 Pfam EF hand 9 29 IPR002048 GO:0005509
Ssu6g1488 140 Pfam EF hand 48 67 IPR002048 GO:0005509
Ssu6g1488 140 CDD EFh 6 67 IPR002048 GO:0005509
Ssu6g1488 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 140 - -
Ssu6g1488 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Ssu6g1488 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Ssu6g1488 140 SUPERFAMILY EF-hand 4 140 IPR011992 -
Ssu6g1488 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Ssu6g1488 140 Gene3D - 1 69 - -
Ssu6g1488 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Ssu6g1488 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Ssu6g1488 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Ssu6g1488 140 CDD EFh 78 140 IPR002048 GO:0005509
Ssu6g1488 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Ssu6g1488 140 Gene3D - 70 140 - -
Ssu6g1488 140 SMART efh_1 78 106 IPR002048 GO:0005509
Ssu6g1488 140 SMART efh_1 114 140 IPR002048 GO:0005509
Ssu6g1488 140 SMART efh_1 42 70 IPR002048 GO:0005509
Ssu6g1488 140 SMART efh_1 6 34 IPR002048 GO:0005509
Ssu6g1488 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Ssu6g1488 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1488 Ssu-Chr6 24440113 24440535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1488 3 140 EF-hand Containing Proteins AT1G76650 46.377 5.67e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1488 K13448 - gmx:100816563 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2359 1 65994857 65995279 Ssu6g1488 6 24440113 24440535 ECH
Ssu6g1488 6 24440113 24440535 Ssu6g1488 6 24440113 24440535 ECH