Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2359 ATGAGCAAGCACGTGGGGTTTGAGGATGTTCTCAGATATTTCGATGAAGATGGGGATGGAAAGGTTTCACCTTCAGAGCTGAGGCACGGGCTGGGAATGATGGGTGGGGAGCTTTTGATGAAAGAAGCAGAGATGGCAATTGCGGCAGTGGATTCTGATGGTGATGGGTTGCTGAGTTTGGAGGATTTCATTGCTCTTATGGAAGCAGGAGGAGAGGAACAGAAGTTGAAGGACTTGAAGGAAGCTTTTGAGATGTATGACACTGAGGGCTGTGGGTTTATAACCCCCAAGAGCTTGAAGAGGATGCTTAAGAAGATGGGCGAGTCCAAGTCCATTGAGGAGTGCAAAGGGATGATCGAACAGTTTGATTTGAATGGGGATGGCATCCTGAGCTTTGAAGAATTCCGAATTATGATGCAGTGA 423 0.4728 MSKHVGFEDVLRYFDEDGDGKVSPSELRHGLGMMGGELLMKEAEMAIAAVDSDGDGLLSLEDFIALMEAGGEEQKLKDLKEAFEMYDTEGCGFITPKSLKRMLKKMGESKSIEECKGMIEQFDLNGDGILSFEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2359 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 140 - -
Ssu1g2359 140 Gene3D - 70 140 - -
Ssu1g2359 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Ssu1g2359 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Ssu1g2359 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Ssu1g2359 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Ssu1g2359 140 SMART efh_1 42 70 IPR002048 GO:0005509
Ssu1g2359 140 SMART efh_1 114 140 IPR002048 GO:0005509
Ssu1g2359 140 SMART efh_1 78 106 IPR002048 GO:0005509
Ssu1g2359 140 SMART efh_1 6 34 IPR002048 GO:0005509
Ssu1g2359 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Ssu1g2359 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Ssu1g2359 140 CDD EFh 78 140 IPR002048 GO:0005509
Ssu1g2359 140 CDD EFh 7 67 IPR002048 GO:0005509
Ssu1g2359 140 SUPERFAMILY EF-hand 6 139 IPR011992 -
Ssu1g2359 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Ssu1g2359 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Ssu1g2359 140 Pfam EF-hand domain pair 11 67 IPR002048 GO:0005509
Ssu1g2359 140 Gene3D - 3 69 - -
Ssu1g2359 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2359 Ssu-Chr1 65994857 65995279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2359 3 140 EF-hand Containing Proteins AT1G76650 46.377 3.79e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2359 K13448 - gmx:100779557 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2359 1 65994857 65995279 Ssu6g1488 6 24440113 24440535 ECH
Ssu1g2359 1 65994857 65995279 Ssu1g2359 1 65994857 65995279 ECH