Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1477 ATGGGGAAATCACGAAAGTACTCCAAAGGTTTTTGCTACCAGTTTGTTCTAGATTTTTGTCATGTTGTAGATACTATGGGTGAGTCAAAAGGACTTGGTAGCTCAAGAAGGGTTGATAATAAGCTTATAATGTCAAAAGGTTCGTGTGCCACAAAGAGGAAATGTCAAGGTTTTGAAAGTTTTGATGTGCCATCTCAATTGTGGTCTTTTACAAAAATGACACGTTATGGGAGAAAGGACTTGAAATTGAGGTTAAAATCTGAACTTGAAGAAGTAAGGaaacttcaaaagaaaattgctaGTATGAATTCAACCACTATTGAATTATCTCTATATAGTGACATAAAGAGCTGCAGTGAGGTAGAAAAGAGGCCTCTAGTGGAGAGGCTTCATAGCACGTTAGAATCATCAGCACTACATGGTGAATATTCAAGTCTTATGAAATTTGCTACAGATGTGCAGTTGGCTTTCTCAAATGCAATGACTTATAATCCACTTGAGAAGAAGATTCTTGCCATTAATGATGTATCATCTGAGCCTTCAAAACCCACTACTTGTgttgaaactaaaattgaagacCAAATTCCTCCtgtggaaaaaaagaaaataatgccAAATGACACTAATGTTAAGCCAGAGCCCATTAAAAGAATCATGACTGATGAGGAGAAGCAAAAGTTGAGTATGGAATTGGAGGCATCACTTGCAGAATTGCCTGAAaacattattgattttttgaaGGAGCAAAGTCATAATGCTGGCCAAATAAATGATGATGAAACTGAGATTGATATAGATGCCCTTAGTGAtgatacattatttatattgcGAAAGCTTCTTGATGATTTTATGCTAGAGAAGCAAAAAACCCAGGCAAAAGCTGGACCATGTGAAATTGAGAGATTGAGAATGGTGGCACCAACAAAACCAGTAAACACAATAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCTTCATCCAGTGGTTTGTGTTACTGCATACTTTTGA 1008 0.3423 MGKSRKYSKGFCYQFVLDFCHVVDTMGESKGLGSSRRVDNKLIMSKGSCATKRKCQGFESFDVPSQLWSFTKMTRYGRKDLKLRLKSELEEVRKLQKKIASMNSTTIELSLYSDIKSCSEVEKRPLVERLHSTLESSALHGEYSSLMKFATDVQLAFSNAMTYNPLEKKILAINDVSSEPSKPTTCVETKIEDQIPPVEKKKIMPNDTNVKPEPIKRIMTDEEKQKLSMELEASLAELPENIIDFLKEQSHNAGQINDDETEIDIDALSDDTLFILRKLLDDFMLEKQKTQAKAGPCEIERLRMVAPTKPVNTIVQAALVVNLALHPVVCVTAYF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1477 335 Pfam Bromodomain 132 168 IPR001487 GO:0005515
Ssu6g1477 335 Gene3D - 213 291 IPR038336 -
Ssu6g1477 335 Coils Coil 78 105 - -
Ssu6g1477 335 PANTHER TRANSCRIPTION FACTOR GTE10 2 125 - -
Ssu6g1477 335 ProSiteProfiles NET domain profile. 209 291 IPR027353 -
Ssu6g1477 335 PANTHER TRANSCRIPTION FACTOR GTE10 133 302 - -
Ssu6g1477 335 SUPERFAMILY Bromodomain 132 167 IPR036427 GO:0005515
Ssu6g1477 335 Pfam Bromodomain extra-terminal - transcription regulation 219 281 IPR027353 -
Ssu6g1477 335 PANTHER TRANSCRIPTION FACTOR GTE8 133 302 - -
Ssu6g1477 335 PANTHER TRANSCRIPTION FACTOR GTE8 2 125 - -
Ssu6g1477 335 Gene3D - 86 193 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1477 Ssu-Chr6 24267504 24270121 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1477 - - gmx:100787770 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2346 1 65765305 65769161 Ssu6g1477 6 24267504 24270121 ECH
Ssu6g1477 6 24267504 24270121 Ssu6g1477 6 24267504 24270121 ECH