Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2346 ATGGCACCAACTGTACCTATAGAGTTTGCTGGACAAAAGGAATCCAGGAAGTATTCTCATTCACAGATCATGGGGAAGTCTAGGAAATACTCCAAAGGTTATGCTACTGGCTTTGTTCCCGATTTTCGGCATGCTGTAGAGACTATGGGTGAATCAGAAGGGTTGGGTAGCTTGGGAAGGGTTGATACAGAGATGACGGCATCGGCAGATTCTTGTGCACCGAAGAGGAAGTGCCTTGGTTTGAATGCTGGTGGTTATGGTAGTTTTGATGTACCATTTCAACTTTTCTCATTATCAAAGATGTCgggttttgagagaaaggaTTTGAAACTGAGGTTAACTTGGGAACTTGAACAAGTAAGGGAACTTCAGAAGAAATATGAGAGTATGAACTCAAACGTTGTTGGATTGTCTCCCTCCAGTGACATAAGGAGCAGCAGTGCAGGACAGAAGAGGCCTAAGCTGGAGAGCCAGCATATGACAAAGGAAGTATTGGTGCCACATGGTAAGAAAAGGCCCTTACCAGGACATAATGGTCCCAAGACAAAGAAAAGTATGTCTGGGCGTTTTGAACATGCAAAACCTGCTGCACCAGTGACTTCATATGCTACGTTGATGAAACTGTGTGAGACATTACTTAGCCGATTGATGTCTCATCAATTTGGTTGGGTTTTTAACACTCCAGTTGACGTTGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAGTATCCAATGGATTTGGGTACTGTGAAGAGGAGAATAACTTCTGGTGAATATTCAAATCCAATGGATTTTGCTGCTGATGTGCGGCTGACTTTCTCTAATGCAATGACTTATAATCCACCTGGCAATGATGTACACATCATGGCAGAGACCCttagtaaattttttgaaaCGAGATGGAAGGCCATAGAGAAGAAAATTCCTGTTATGAATTGTGTCCCATCTGAGCCTTCAAGACCTACTCGTGTGGAAACAGAAATTTCCGACCAAGTTCCTcccacaaaaaagaagaaaataacacCAAATGACACTAATGTCAAGCCAGAGCCTGTTAAAAGAATCATGACCGTTGAGGAGAAGCATAAATTGAGTCAAGAGTTGGAGGCACTGATTGGAGAGCTGCCTGATGCCATTGTAGATTTCTTGAGAGAGCAAAGTTATAATGCAGGGCAAACCAATGATGATGAAATTGAGATCGATATTGATGCTCTTAGTGATGATACCTTATTCAAACTGCGGAAGCTTCTTGATGATTATATGCTGGAGAAGCAAAGATCCCAGGCAAAACCTGGACAGTGTGAAATGGagCTTCTGAATGAATCAGGGTTCAGCAATTCATCAATGCAACCATGCAAAGGAAATGAACAGGTTGAGGAAGATGTGGACATTGTTGGTGGGAATGATCCTCCTATTTCAAATTATCCTCCATTAGAGATTGAAAAAGATGGTACTAATAGAAACAGTAAATGCAGTAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCTTCATCCAGTGATTCAGACTCAGGTAGTTCATCTGGTAGTGAGTTGGATATGGCTAAAGCATCAGAACCTGTTAGTGCTACCAAGGAAAATGTAGGATCTGGCTTGACTTCAGATCAAAACAAAGGGGATCCTGGTAATTCAAAAACAGTAAAGGATTCAACAAATGTGGGAGGCCAAGTTGAGCAGAGTTCCCAGACTAAGCCTGTTGTTACTGAGCTAGAAAGCCATCAAGAGGGGGAGAGTGCTGCATCTAAGAGGCAAGTCTCTCCCGAAAAGCTCTACCGTGCAGCCTTATTAAGGAGCCGGTTTGCTGACACCATACTTAAAGCTCAAGAGAAAGCCCTTGAAAAGGATGAGAAGCGGGATCCTGAAAAACTTAGGATAGAGCGAGAAGATCTTGAAAGGCGGCAGAAAGAAGAGAAAGCTCGATTGCAGGCAGAGGCAAAGGCTGCAGAAGAGGCTCAGAGGAAAGCTGAAGCAGAAGCTGCAGCTGAAGCCAAAAGGAAAAGGGAACTGGAAAGAGAAGCAGCACGTCAGGCTTTGCAAAAGATGGAGAAAACTGTTGACATCAATGAGAGcagtcaatttttggaagatCTAGAGATGCTGAGTGCTGTACATGATGAACGTATGCCAAGTTTCAAAGAGGAAACAAGTGCAGATGAACCTCAAAATGGATTGGGTAGGCTCACGCTACAGGGAAATCCCTTAGAACAGCTAGGATTGTACATGAAGGCtgatgaggaggaggaggaggaggaggaggaggaactGTCTCCAAGTGGTGCTGCAGGACCATCAAATGATGTGGAAGAAGGGGAAATTGATTGA 2346 0.4135 MAPTVPIEFAGQKESRKYSHSQIMGKSRKYSKGYATGFVPDFRHAVETMGESEGLGSLGRVDTEMTASADSCAPKRKCLGLNAGGYGSFDVPFQLFSLSKMSGFERKDLKLRLTWELEQVRELQKKYESMNSNVVGLSPSSDIRSSSAGQKRPKLESQHMTKEVLVPHGKKRPLPGHNGPKTKKSMSGRFEHAKPAAPVTSYATLMKLCETLLSRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKYPMDLGTVKRRITSGEYSNPMDFAADVRLTFSNAMTYNPPGNDVHIMAETLSKFFETRWKAIEKKIPVMNCVPSEPSRPTRVETEISDQVPPTKKKKITPNDTNVKPEPVKRIMTVEEKHKLSQELEALIGELPDAIVDFLREQSYNAGQTNDDEIEIDIDALSDDTLFKLRKLLDDYMLEKQRSQAKPGQCEMELLNESGFSNSSMQPCKGNEQVEEDVDIVGGNDPPISNYPPLEIEKDGTNRNSKCSSSSSSSSESGSSSSDSDSGSSSGSELDMAKASEPVSATKENVGSGLTSDQNKGDPGNSKTVKDSTNVGGQVEQSSQTKPVVTELESHQEGESAASKRQVSPEKLYRAALLRSRFADTILKAQEKALEKDEKRDPEKLRIEREDLERRQKEEKARLQAEAKAAEEAQRKAEAEAAAEAKRKRELEREAARQALQKMEKTVDINESSQFLEDLEMLSAVHDERMPSFKEETSADEPQNGLGRLTLQGNPLEQLGLYMKADEEEEEEEEEELSPSGAAGPSNDVEEGEID 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2346 781 MobiDBLite consensus disorder prediction 531 577 - -
Ssu1g2346 781 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Ssu1g2346 781 PANTHER TRANSCRIPTION FACTOR GTE10 25 761 - -
Ssu1g2346 781 PANTHER TRANSCRIPTION FACTOR GTE8 25 761 - -
Ssu1g2346 781 SUPERFAMILY Bromodomain 182 311 IPR036427 GO:0005515
Ssu1g2346 781 Gene3D - 189 315 IPR036427 GO:0005515
Ssu1g2346 781 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Ssu1g2346 781 MobiDBLite consensus disorder prediction 707 722 - -
Ssu1g2346 781 Coils Coil 635 692 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 723 737 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 464 596 - -
Ssu1g2346 781 Gene3D - 352 430 IPR038336 -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 750 764 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 318 350 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 489 521 - -
Ssu1g2346 781 CDD Bromo_plant1 205 303 IPR037377 -
Ssu1g2346 781 Pfam Bromodomain extra-terminal - transcription regulation 358 420 IPR027353 -
Ssu1g2346 781 SMART bromo_6 198 308 IPR001487 GO:0005515
Ssu1g2346 781 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Ssu1g2346 781 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Ssu1g2346 781 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Ssu1g2346 781 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Ssu1g2346 781 MobiDBLite consensus disorder prediction 618 781 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 618 687 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 138 154 - -
Ssu1g2346 781 ProSiteProfiles NET domain profile. 348 430 IPR027353 -
Ssu1g2346 781 Coils Coil 742 762 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 138 189 - -
Ssu1g2346 781 MobiDBLite consensus disorder prediction 155 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2346 Ssu-Chr1 65765305 65769161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2346 - - gmx:100776368 1234.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2346 1 65765305 65769161 Ssu6g1477 6 24267504 24270121 ECH
Ssu1g2346 1 65765305 65769161 Ssu1g2346 1 65765305 65769161 ECH