Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1454 ATGGAGCAATTCTGGTCTGGGAGTGCCATCAATGAAAACAAAGGAATGGTAGATAATTTGCAGCGTTATGGTGTAATCACATCTAGAAAGGTAGGTGAAGTAATGGAAACCATTGATAGAGCTTTGTTCGTACCCGGCGGACTCCAACCTTATGTGGACAGTCCTATGCCAATAAGCTACAATGCCACTATCTCTGCACCGCATATGCATGCCACCTGCCTTCAGTTGCTGGAGAAGAATTTGCAACCTGGAATGCGTGCTCTGGATGTTGGCTCCGGAACGGGATACCTGACTGCTTGCTTTGCCTTGATGGTTGGACCCCAAGGCCGTGCTATTGGTGTGGAACATATTCCTGAATTGGTCTCTTTTTCAActgaaaatattcaaaaaagtgCTGCAGCTCAACCATTGAAAGATGGTTCCCTTTCTGTGCATGTTGGTGATGGAAGGCAAGGTTGGCCTGAGTTTGCTCCTTATGATGCCATTCACGTTGGAGCGGCGGCACCAGAAATCCCCCAACCACTTATTGACCAGTTGAAGCCGGGTGGCAGAATGGTTATTCCTGTTGGAAACATATTTCAGGATCTAAAGGTTGTGGATAAGAACTCTGATGGTTCTATCAGTATCCGGACTGAGACTTCTGTTCGATATGTGCCTCTCACTAGCAGAGAAGCTCAACTGCGAGGTTAG 690 0.4594 MEQFWSGSAINENKGMVDNLQRYGVITSRKVGEVMETIDRALFVPGGLQPYVDSPMPISYNATISAPHMHATCLQLLEKNLQPGMRALDVGSGTGYLTACFALMVGPQGRAIGVEHIPELVSFSTENIQKSAAAQPLKDGSLSVHVGDGRQGWPEFAPYDAIHVGAAAPEIPQPLIDQLKPGGRMVIPVGNIFQDLKVVDKNSDGSISIRTETSVRYVPLTSREAQLRG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1454 229 Gene3D Vaccinia Virus protein VP39 5 229 IPR029063 -
Ssu6g1454 229 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 198 IPR029063 -
Ssu6g1454 229 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 147 162 IPR000682 GO:0004719|GO:0036211
Ssu6g1454 229 CDD AdoMet_MTases 86 189 - -
Ssu6g1454 229 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 12 226 IPR000682 GO:0004719|GO:0036211
Ssu6g1454 229 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 12 224 - -
Ssu6g1454 229 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 3 229 - -
Ssu6g1454 229 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 3 229 IPR000682 GO:0004719|GO:0036211
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1454 Ssu-Chr6 23846681 23848774 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1454 K00573 - gmx:100527082 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1454 6 23846681 23848774 Ssu6g1454 6 23846681 23848774 ECH
Ssu6g1454 6 23846681 23848774 Ssu1g2307 1 65019117 65021390 PCT