Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1438 ATGATGCAAGACTCAATTGGGATTCCTGCTTGCTTTTCTTCAGCAGAGAAGCAGCACAGTGATGATCATGGGGCTGTGACCCGTTCAGGTCAGAGCGTCTACATGTCTGTGTATAGAACCAAGGTTGCTGATCACTGCCGTTTGATCACCATCACATGGTGCAAAAACCTGTTGCTTCATGGGCTTTCGGTGTCCGTGGAAGGCCCAGAAGGAGAGGAACAGTACAGGTGCAAGGTTGAGCTGAAGCCTTGGTACTTTTGGAGGAAACAAGGTTCCAAGCGCTTCATAGTAGAGGGTAAAGCCGTTGACGTTTTCTGGGACCTTAAGGCTGCGAAATTTAACGGCGAAACGGAACCAACCTCGGAGTACTACGTGGCAGTGGTTTGTGATGAAGAGGTTGTGCTGCTTCTTGGTGATCTAAAGAAAGAGGCGTACAGAAGGACCGGGTGCAGGCCAGCACTTATTGATCCCATTTTGGTTTCAAAGAAGGAGCACATTTTTGGGAAGAAGAAGTTCTCCACTAGAGCCAAGTTCCACGAGAAGGGTAGGTGGCATGAGATTTCAATTGAGTGCAAGAACAAAGGAAACAATGGCGATTCTTCTCTAAGTGGGGTTCAGCCAGAGATGGAGATAAGGATTGATGGGCACTTGGTGATTCATGTCAAGCACTTGCAATGGAAGTTTAGAGGCAACGAGTCAATTCATCTCAGCAAAATGAGAGTAGAGGTATATTGGGATGTTCATGATTGGCTATTTAGTCCTGGTTTAAAGCAtgctttattcatttttaagccAATTTTGTCATCTACTACTACTTCTATGTCATCTTCGTCACCTTCATTGTCATCCTCATCACCTCCATTATCCACTGATCAGACAAGGAGTTCTGGATCAGTGGAGGGATTTAGTGTTAGTGGGTCATCAGAGTTTTGCTTGTTTCTCTATGCTTGGAAGGTTGAATGA 963 0.4476 MMQDSIGIPACFSSAEKQHSDDHGAVTRSGQSVYMSVYRTKVADHCRLITITWCKNLLLHGLSVSVEGPEGEEQYRCKVELKPWYFWRKQGSKRFIVEGKAVDVFWDLKAAKFNGETEPTSEYYVAVVCDEEVVLLLGDLKKEAYRRTGCRPALIDPILVSKKEHIFGKKKFSTRAKFHEKGRWHEISIECKNKGNNGDSSLSGVQPEMEIRIDGHLVIHVKHLQWKFRGNESIHLSKMRVEVYWDVHDWLFSPGLKHALFIFKPILSSTTTSMSSSSPSLSSSSPPLSTDQTRSSGSVEGFSVSGSSEFCLFLYAWKVE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1438 320 MobiDBLite consensus disorder prediction 273 303 - -
Ssu6g1438 320 PANTHER OS01G0909400 PROTEIN 2 320 - -
Ssu6g1438 320 PANTHER EXPRESSED PROTEIN 2 320 IPR008586 -
Ssu6g1438 320 Pfam Plant protein of unknown function (DUF868) 29 318 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1438 Ssu-Chr6 23524236 23525198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1438 8 320 EF-hand Containing Proteins AT5G28150 38.608 4.47e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1438 - - gmx:100779755 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1438 6 23524236 23525198 Ssu6g1438 6 23524236 23525198 ECH
Ssu6g1438 6 23524236 23525198 Ssu1g2288 1 64666305 64667279 PCT