Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2288 ATGCAAGATTCAATTGGGATTCCAGCTTGCTTCTCTTCTGCTTTGAAATCAAGTGATGATCACACAACCGTGACCCGTTCAGGCCAGAGCGTTCACATGTCTGTATACAGAACAAAGATCGCTGATCACTGCCGCTTGATCACCATCACATGGTGCAAAAACTTGATGCTCCATGGGCTATCAGTGTCAGTGGAAGGCCCAGAAGGAGAGGCCCAATACAGCTGGAAGGTCAAGCTGAAGCCGTGGTACTTTTGGAGAAAACAAGGTTCCAAGCGCTTCATAGTACACGGTGACAAAGCCGTAGACATTTTCTGGGACCTCAAGGCCGCGAAATTCGACGGCGAGACAGAACCAACCTCGGAGTACTATGTGGCAGTGGTGTGCAACCAAGAGGTTGTGCTGCTGATTGGTGATTTAAAGAAAGAAGCCTACAGAAAAACCGGGTGCAGGCCAGCACTTTTTGACCCACTTTTGGTTTCGAAAAAAGAACACATATTTGGGAAGAGAAAGTTCTCCACTAGAGCCAAGTTTCACGAGAAAGGTAGGTGCCATGAGATCTCAATTGACTGCCAGAACAAGAGCAATGTTGGAGGAGACTCTTCAAGTGGGGTTCAGGTTCAGCCAGAGATGGAGATAAGATTTGACGGGCACGTGATGATCCACGTGAAGCACTTGCAATGGAAGTTTAGAGGCAACGAATCAGTTCATCTCAACAAAATGAGAGTGGAGGTGTATTGGGATGTTCACGATTGGCTATTTAGTCCTGGTTTGAAACatgctttgtttatttttaagccTGTTTTATCATCTATGTCAATGTCATCATCACATTCACTTTCATCATCGTCACCACCGTTATCATCCTCGTCCACACCGTTATCAACTAAAACGGGGAGTTCTGGGTCGCTAGAGGGCTTTAGTGTCAGCGAGTCATCAGAGTTTTGCTTGTTTCTATATGCTTGGAAGGTTGAGTGA 975 0.4533 MQDSIGIPACFSSALKSSDDHTTVTRSGQSVHMSVYRTKIADHCRLITITWCKNLMLHGLSVSVEGPEGEAQYSWKVKLKPWYFWRKQGSKRFIVHGDKAVDIFWDLKAAKFDGETEPTSEYYVAVVCNQEVVLLIGDLKKEAYRKTGCRPALFDPLLVSKKEHIFGKRKFSTRAKFHEKGRCHEISIDCQNKSNVGGDSSSGVQVQPEMEIRFDGHVMIHVKHLQWKFRGNESVHLNKMRVEVYWDVHDWLFSPGLKHALFIFKPVLSSMSMSSSHSLSSSSPPLSSSSTPLSTKTGSSGSLEGFSVSESSEFCLFLYAWKVE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2288 324 PANTHER OS01G0909400 PROTEIN 1 324 - -
Ssu1g2288 324 PANTHER EXPRESSED PROTEIN 1 324 IPR008586 -
Ssu1g2288 324 Pfam Plant protein of unknown function (DUF868) 27 322 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2288 Ssu-Chr1 64666305 64667279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2288 8 324 EF-hand Containing Proteins AT5G28150 37.072 3.94e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2288 - - gmx:100816323 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2288 1 64666305 64667279 Ssu1g2288 1 64666305 64667279 ECH
Ssu6g1438 6 23524236 23525198 Ssu1g2288 1 64666305 64667279 PCT