Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1436 ATGGACTTCGACTTCAGGGCTAGTTTTCATTCGGCCAAGCATCTTTCTGCTGTGCAAGCTGCTAGACTTCATTCTGATAGTTTTTCAGGGATCCATTACACAGATGTGGATAATGATGGCCGGTGTGATTTTCAATGTcctttttgtgattttgaaatcGAAGTTCCTGTGCTCTGCAGCAATTTGGAAGAGGAGCATTGCTCTGCTCTTAAAAATGTGGTTTGTCCTGTATGTGAAGAAAATTTAGGGAAAGACGCAATCATGCAATTTACACATTCAAGCTCTCGAAAGTGGGCATGGAAACCTGAGAAATCTAGCATCTGGTCTGGTAACTCAGCAATGCTTGGCAAGAAGCTGGCTACCAGGGGAAACAAACAAGAATCAATACCTGATCCACTTTTGTCACCATTTATCTGCAACGTGCCTCTTCCAAACTCTAACAATTTCCATCCAGATGAAAAGTCCAGCTCCAGCAACAAGGATATAGACATTCCTGATGCAAAAAGGACTGGCACAGATGCACCTGAACTGGGTGATGAGCAGGATCAACAAGAGAGAAGGCTGAGGGCAGCTTTTGTTCAACAGTTGGTATTCTCAACCATATTCGAGTAA 612 0.4216 MDFDFRASFHSAKHLSAVQAARLHSDSFSGIHYTDVDNDGRCDFQCPFCDFEIEVPVLCSNLEEEHCSALKNVVCPVCEENLGKDAIMQFTHSSSRKWAWKPEKSSIWSGNSAMLGKKLATRGNKQESIPDPLLSPFICNVPLPNSNNFHPDEKSSSSNKDIDIPDAKRTGTDAPELGDEQDQQERRLRAAFVQQLVFSTIFE 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1436 203 Pfam Drought induced 19 protein (Di19), zinc-binding 43 92 IPR008598 -
Ssu6g1436 203 PANTHER PROTEIN DEHYDRATION-INDUCED 19 HOMOLOG 5 1 202 - -
Ssu6g1436 203 MobiDBLite consensus disorder prediction 148 186 - -
Ssu6g1436 203 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 202 IPR033347 -
Ssu6g1436 203 MobiDBLite consensus disorder prediction 154 186 - -
Ssu6g1436 203 Pfam Stress-induced protein Di19, C-terminal 123 201 IPR027935 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1436 Ssu-Chr6 23492104 23496980 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1436 - - vun:114175178 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1436 6 23492104 23496980 Ssu6g1436 6 23492104 23496980 ECH
Ssu6g1436 6 23492104 23496980 Ssu1g2285 1 64586817 64591151 PCT