Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1428 ATGGATCCGAACCCAGGAAGCTTCCCCATTCTCTCCTACGTCATGTCCCGTCTACCTTCCTTCGGGCCCAGAACCCCCACCGCCGGCACGTCCCATTCCCATTCCCATTTCGACGTCGAACAACCCCCTCCCTCCGAcccttcatcttcttcttcttcctcctcaatCGTGGGCCAAATGCCTAATCTAACGGACCCCAAACTGTTGGCCTCCATGACCCGCGCCATCTCCGACGTCTCCCAGGCCCGATCCGTCCTCAAGCTGATCGGGGCCCGGCCCACCCACGAGGAGGTCGACGACGCCAAGGCCAAGCTGGCGGACCTCGAAGCCCATCTGTCCCGCCAACTGGAAGAGATCGTGGTCCTCCCCAGGCCCCCCGAGATCGACGAGCCCCGCTGGCGGGCCCACCTCGCCGACAGAGAAAAGACGTGCAAGGAATCCGCGGAGAAAGAGAGGCGCGTTCTCAAGTCGCTGATTCAGCTCGACCAGATGCACGACGATTACGAGAAGCTCCTCAAGGACGCCGAAAAGCGATTGGTCAAGATTTACGAGGACCATGGCGACGACGACAACGACAACAACAACGATGGTGCTGGTGACGACGTGAATGAACAGGTTGAGGGGATATTGCAAGAGGCCTACGGAAAAGGCGTGGAGCGAATCGATCTTTCGGGGAAGCGCCTCAAGTACCTGCCTGAAGCATTTGGCCGCATTCCTGCATTGGTGGTGCTCGATCTCTCCACCAATCGACTCTCGGTGATTCCTGACTCGATCTCTGGATTGCAAAATCTCGAGGAGCTTAACATCTCTTCCAATGTTTTGGAGTCGCTGCCAGATTCAATTGGCTTGTTGCAGAAGTTGAAATTCCTCAATGTCTCTGGAAACAAGCTGAGTGCCCTCCCCGATTCTCTCAGTCAGTGCAGGTTATTGGTGGAGCTAGATGCAAGCTTTAACAGCCTGACATATTTGCCAACAAACATTGGATATGAATTGCTTAATTTGCAGAAGCTCTTGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCCATTTGTGAGATGAAATCCTTGCGCTATCTGGATGCTCACTTTAATGAGCTGCACGGGCTTCCTATTGCAATTGGGAAATTGACCAATCTTGAAGCTCTCAACCTGAGCAGCAACTTCAGTGACCTTAAAGAACTTCCAGAGACATTTGGTGATCTGATTAACCTCAGGGAGTTGGATCTCGGCAACAACCAAATTCATGCACTTCCTGATACTTTTGGTCGCCTTGAGAATTTGACTAAGTTAAACTTGGAGCAGAATCCTCTGGAAGTGCCACCATCGGAGATTGTGAATCAAGGGGTCCAAGCCATTAAGAGTTTCATGGCCCAGAGGTGGATTGATATATTGGcagaggaagaaagaaaaagcaccCATGAATTACAAGAACAAGGACAGAATGGCTGGTTAACACGAAGCACCTCTTGGCTGAAGAATGTTTCTGAAAATGTAACTGAGATGATTATGTCCCCCAGAAGTCCCAAAGATGCTTATCTTGATCAGCAGCTATGA 1557 0.4965 MDPNPGSFPILSYVMSRLPSFGPRTPTAGTSHSHSHFDVEQPPPSDPSSSSSSSSIVGQMPNLTDPKLLASMTRAISDVSQARSVLKLIGARPTHEEVDDAKAKLADLEAHLSRQLEEIVVLPRPPEIDEPRWRAHLADREKTCKESAEKERRVLKSLIQLDQMHDDYEKLLKDAEKRLVKIYEDHGDDDNDNNNDGAGDDVNEQVEGILQEAYGKGVERIDLSGKRLKYLPEAFGRIPALVVLDLSTNRLSVIPDSISGLQNLEELNISSNVLESLPDSIGLLQKLKFLNVSGNKLSALPDSLSQCRLLVELDASFNSLTYLPTNIGYELLNLQKLLIQLNKIRSLPSSICEMKSLRYLDAHFNELHGLPIAIGKLTNLEALNLSSNFSDLKELPETFGDLINLRELDLGNNQIHALPDTFGRLENLTKLNLEQNPLEVPPSEIVNQGVQAIKSFMAQRWIDILAEEERKSTHELQEQGQNGWLTRSTSWLKNVSENVTEMIMSPRSPKDAYLDQQL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1428 518 Gene3D Ribonuclease Inhibitor 138 322 IPR032675 -
Ssu6g1428 518 ProSiteProfiles Leucine-rich repeat profile. 263 284 IPR001611 GO:0005515
Ssu6g1428 518 ProSiteProfiles Leucine-rich repeat profile. 404 425 IPR001611 GO:0005515
Ssu6g1428 518 Coils Coil 98 118 - -
Ssu6g1428 518 Coils Coil 158 185 - -
Ssu6g1428 518 PANTHER LEUCINE-RICH REPEAT-CONTAINING 5 508 - -
Ssu6g1428 518 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Ssu6g1428 518 MobiDBLite consensus disorder prediction 19 62 - -
Ssu6g1428 518 MobiDBLite consensus disorder prediction 23 61 - -
Ssu6g1428 518 SMART LRR_bac_2 354 373 - -
Ssu6g1428 518 SMART LRR_bac_2 284 303 - -
Ssu6g1428 518 SMART LRR_bac_2 307 326 - -
Ssu6g1428 518 SMART LRR_bac_2 238 257 - -
Ssu6g1428 518 SMART LRR_bac_2 331 350 - -
Ssu6g1428 518 SMART LRR_bac_2 377 398 - -
Ssu6g1428 518 SMART LRR_bac_2 261 280 - -
Ssu6g1428 518 SMART LRR_bac_2 402 421 - -
Ssu6g1428 518 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 5 508 - -
Ssu6g1428 518 Gene3D Ribonuclease Inhibitor 328 458 IPR032675 -
Ssu6g1428 518 Pfam Leucine rich repeat 239 297 IPR001611 GO:0005515
Ssu6g1428 518 Pfam Leucine rich repeat 379 438 IPR001611 GO:0005515
Ssu6g1428 518 SMART LRR_typ_2 331 354 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 402 424 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 284 307 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 238 260 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 308 330 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 425 448 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 261 283 IPR003591 -
Ssu6g1428 518 SMART LRR_typ_2 377 401 IPR003591 -
Ssu6g1428 518 SUPERFAMILY L domain-like 210 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1428 Ssu-Chr6 23444404 23446662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1428 221 477 Receptor kinase-like Gene Family AT5G56040 27.070 7.83e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1428 - - gmx:100782818 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1428 6 23444404 23446662 Ssu6g1428 6 23444404 23446662 ECH
Ssu6g1428 6 23444404 23446662 Ssu1g2278 1 64461352 64464556 PCT