Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2278 ATGGATCCCAACCCTGGAACCTTTCCGCTCCTCTCCTACGTCATGTCGCGCCTCCCTTCCCTGACGCCCAGACCCGCCGCGGCGCCTTCCGATTCCGACCAGTTCGACATCGAGCAGCCACGCGCCCCGGAGATCGTGGGGCAAATGCCGCATCTCGCGGACCCCGACCTCGTGGCCTCGATGGGCCGGGCCGTGTCCCAGGTGGCACAGGCCCGCTCGGTCCTGAAGCTAATCGGGGAGCGGCCCACCCACGAGGAGGTGGACAATGCCCGGGCCAAAGTGGCGGAGGTCGAGGCCCAGCTGTCCCGCGAGCTGGAGGAGATCGTGCTGCAGGCGCGGCCCGCGGAGATGGAGATCCACGGGTGGCGGGCCCACCAGGCCGAGAGGGAGAGGGAGCGCAGGGAGTGGGCCGAGAGGGAGAAGCGGGTCTGGAAATCGGTGCTGCAGCTGGACGAGATGCACGAGGCCTACGAGAAGCTTCTAAAAGACGCCGAGAAGCGCTTGGTGAAAATGTACGAGTCTAGGGAAGATGGCGACGGTGACGTGGCAGGTGACGAAGTGAACGAAGAGGTTGTGGGGATTCTGCAAGAGGCTTATGGAAAAGGAGTGGAGCGAGTCGATCTTTCTGGACGCCAATTGAAGTTCTTGCCTGAGGCATTTGGTCGAATTCCTGGCTTGCTCGTGCTCGACCTTTCAGGCAATCAACTCTCGGCAATTCCCGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTGTCTTCAAATCTTTTGGAATCACTGCCGGACTCAATTGGGTTGTTGCAAAGGTTGAAATTGCTCAGTGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATTCCATCTGTCAGTGCAGGTCATTGGTGGAGTTGGATGTAAGCTTTAACAATTTATCATATTTGCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATGATTCAGTTGAACAAGATTCGATCTCTTCCCTCATCTGTTTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTTAATGAGCTACATGGGCTTCCTATTGCAATTGGGAGACTGACTAATCTTGAAGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCTGAGACATTTGGTGATTTGACTAACCTCAGGGAATTGGATCTCAGCAATAATCAGATTCATGCACTTCCCGATACTTTTGGTCGCCTTAATAATTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCATAAAGACCTTTATGGCCAAGAGGTGGATTGATATATTGttggaggaagaaaggaaaagcaacCAAGAAATGCAAGAACAAGAACAGGGTGATTGGTTAACCCGAAGCACCTCCTGGTTGAAGAATGTTTCTGAAAATGTAATTGGGTATATTGGAACTGCCGCTGGATCTCCTATGTCACCCAAATCTCCCAGAGATGCATATCTTGATCAGCAGCTATGA 1533 0.5101 MDPNPGTFPLLSYVMSRLPSLTPRPAAAPSDSDQFDIEQPRAPEIVGQMPHLADPDLVASMGRAVSQVAQARSVLKLIGERPTHEEVDNARAKVAEVEAQLSRELEEIVLQARPAEMEIHGWRAHQAERERERREWAEREKRVWKSVLQLDEMHEAYEKLLKDAEKRLVKMYESREDGDGDVAGDEVNEEVVGILQEAYGKGVERVDLSGRQLKFLPEAFGRIPGLLVLDLSGNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQRLKLLSVSGNKLTALPDSICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLMIQLNKIRSLPSSVCELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHALPDTFGRLNNLTKLNLEQNPLELPPMEIVNQGVEAIKTFMAKRWIDILLEEERKSNQEMQEQEQGDWLTRSTSWLKNVSENVIGYIGTAAGSPMSPKSPRDAYLDQQL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2278 510 PANTHER LEUCINE-RICH REPEAT-CONTAINING 6 491 - -
Ssu1g2278 510 SUPERFAMILY L domain-like 199 428 - -
Ssu1g2278 510 ProSiteProfiles Leucine-rich repeat profile. 248 269 IPR001611 GO:0005515
Ssu1g2278 510 SMART LRR_bac_2 339 358 - -
Ssu1g2278 510 SMART LRR_bac_2 316 335 - -
Ssu1g2278 510 SMART LRR_bac_2 246 265 - -
Ssu1g2278 510 SMART LRR_bac_2 292 311 - -
Ssu1g2278 510 SMART LRR_bac_2 269 288 - -
Ssu1g2278 510 SMART LRR_bac_2 387 406 - -
Ssu1g2278 510 SMART LRR_bac_2 362 383 - -
Ssu1g2278 510 SMART LRR_bac_2 223 242 - -
Ssu1g2278 510 ProSiteProfiles Leucine-rich repeat profile. 389 410 IPR001611 GO:0005515
Ssu1g2278 510 MobiDBLite consensus disorder prediction 489 510 - -
Ssu1g2278 510 Coils Coil 87 107 - -
Ssu1g2278 510 Coils Coil 147 174 - -
Ssu1g2278 510 Gene3D Ribonuclease Inhibitor 323 443 IPR032675 -
Ssu1g2278 510 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 6 491 - -
Ssu1g2278 510 SMART LRR_typ_2 362 386 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 316 339 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 246 268 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 387 410 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 293 315 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 223 245 IPR003591 -
Ssu1g2278 510 SMART LRR_typ_2 269 292 IPR003591 -
Ssu1g2278 510 Gene3D Ribonuclease Inhibitor 198 322 IPR032675 -
Ssu1g2278 510 PRINTS Leucine-rich repeat signature 226 239 - -
Ssu1g2278 510 PRINTS Leucine-rich repeat signature 387 400 - -
Ssu1g2278 510 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Ssu1g2278 510 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Ssu1g2278 510 Pfam Leucine rich repeat 205 259 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2278 Ssu-Chr1 64461352 64464556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2278 206 462 Receptor kinase-like Gene Family AT5G56040 29.618 3.65e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2278 - - gmx:100803823 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2278 1 64461352 64464556 Ssu1g2278 1 64461352 64464556 ECH
Ssu6g1428 6 23444404 23446662 Ssu1g2278 1 64461352 64464556 PCT