LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1421	ATGGCCTCGGTTCCGCAAAAGGCGACGGCTCCTCCTTCAGTTCCCGCCGCCGCCACCAATGCCGCAGCACCAGACTGGACCCACCATCAGCGTGACAACAAGCTATCCAGGCCCATCTCTGAACCTTCCACTGATGCCTTTCCTCCTAAAGGAATTAGTACAATGTCTAGGACCCAATCAAGCCACCCTTTGGACCCTTTATCTGCAGCCGAAATCTCTGTGGCAGTGGCAACCGTGAGGGCAGCTGGAGCCACTCCTGAGCTCCGAGACAGTATGCGCTTCATTGAAGTAGTTTTGTTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCTTATTTCTTTCCACCTTTCCAACCATCGTTACTTCCTAGAACTAAAGGAGGGCCAGTAATTCCCAGTAAACTCCCTCCAAGACGCGCTAGACTAGTTGTTTACAATAAGAAGACAAATGAGACTAGTATGTGGATCATTGAATTAGCGCATGTACATGCAGTAACTCGAGGAGGTCATCACCGTGGAAAAGTAATTTCATCACACGTTGTTCCAGATGTTCAGCCTCCAATGGATGCTATGGAATATGCAGAATGTGAAGCTGTTGTTAAAGATTTTCCTCCATTTAGAGAGGCTATGAAGAAAAGGGGCATTGAAGATATGGACCTTGTAATGGTTGATGCCTgGTGTGTTGGTTATTACAGTGAAGCTGATAGTCCCTGCCGTAGACTTACGAAGCCACTTATATTTTGCCGAGCCGAAAGTGACTGCCCCATGGAAAATGGCTACGCACGCCCACTTGAGGGCATCAATGTGCTTGTTGATATGCAAAAAATGGTGGTTATTGAATTTGAAGACCGAAAATTTGTTCCTCTACCTCCGGTTGACCCCTTGAGGAACTATACACATGGTGAAACAAGAGGTGGATCTGATAGAAGTGATACAAAACCCTTGCAAATTATTCAGCTTGAAGGTCCAAGCTTTCGTGTCGATGGGTCTTATGTTGCATGGCAAAAGTGGAACTTTCGTATTGGATTCTCACCCAGAGAAGGTTTGGTTATATATTCGGTTGCATATGTTGATGGTAGTCAAGGGCGAAGGCCTGTAGCTCATAGACTGAGTTTTGTGGAGATGGTTGTGCCCTATGGAGATCCAAATGAACCACATTACAGGAAGAATGCTTTTGATGTAGGGGAAAATGGCTTGGGAAAAAATGCACATTCTCTCAAGAAGGGGTGTGATTGTTTGGGCTACATCAAATACTTTGATGCTCATTTCACAAATTTCACGGGTGGAGTTGAGACAATTGAAAATTGTGTATGTTTGCACGAAGAGGATCATGGAATTCTGTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGAAGGTCTAGAAGGCTTTCAGTTTCTTTTATGTGTACTGTGGCTAACTATGAGTATGGATTTTTTTGGTACTTTTATCAGGATGGAAAAATTGAAGCTGAGGTTAAGCTAACAGGAATTCTAAGCTTAGGAACCTTGTTACCTGGAGAGTTTCGTAAATATGGAACCATGATTGCGCCAGGTCTATATGCTCCAGTTCATCAACACTTTTTTGTAGCTCGTATGGACATGGCTGTGGATTCTAAACCGGGTGATGCTTTGAATCAGGTCGTGGAGATCAATGTCAAAGTTGAGGAACCAGGGGAGAATAATGTTCACAATAATGCTTTTTATGCTGAAGAGACTCTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATCCTTTGACCGCTCGACATTGGATTGTAAGGAACACGCGAATAGGCAATAGAACTGGACAGCTGACAGGCTATAAGCTAGTGCCTGGCTCAAACTGCTTACCATTGGCAGGTTCTGAGGCCAAATTTTTAAGAAGAGCTGCTTTCTTGAGGCATAATCTTTGGGTAACATCCTATTCACACGATGAAATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCACGTGTCAGCGAAGGACTAGCTACATGGGTTAAGCAAAACCGATCTTTGGAAGAAACTGATATAGTTCTTTGGTCCTCTCCCTCTCACGCACAtacattttatgaaatttttctgGGATAA	2109	0.4391	MASVPQKATAPPSVPAAATNAAAPDWTHHQRDNKLSRPISEPSTDAFPPKGISTMSRTQSSHPLDPLSAAEISVAVATVRAAGATPELRDSMRFIEVVLLEPDKHVVALADAYFFPPFQPSLLPRTKGGPVIPSKLPPRRARLVVYNKKTNETSMWIIELAHVHAVTRGGHHRGKVISSHVVPDVQPPMDAMEYAECEAVVKDFPPFREAMKKRGIEDMDLVMVDAWCVGYYSEADSPCRRLTKPLIFCRAESDCPMENGYARPLEGINVLVDMQKMVVIEFEDRKFVPLPPVDPLRNYTHGETRGGSDRSDTKPLQIIQLEGPSFRVDGSYVAWQKWNFRIGFSPREGLVIYSVAYVDGSQGRRPVAHRLSFVEMVVPYGDPNEPHYRKNAFDVGENGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFMCTVANYEYGFFWYFYQDGKIEAEVKLTGILSLGTLLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMAVDSKPGDALNQVVEINVKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNPLTARHWIVRNTRIGNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLRHNLWVTSYSHDEMFPGGEFPNQNPRVSEGLATWVKQNRSLEETDIVLWSSPSHAHTFYEIFLG	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1421	702	PANTHER	AMINE OXIDASE	31	688	-	-
	Ssu6g1421	702	Gene3D	Copper amine oxidase, catalytic domain	303	697	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	Pfam	Copper amine oxidase, N2 domain	62	151	IPR015800	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	Pfam	Copper amine oxidase, N3 domain	187	291	IPR015802	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	SUPERFAMILY	Amine oxidase catalytic domain	310	694	IPR036460	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	Pfam	Copper amine oxidase, enzyme domain	316	694	IPR015798	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	Gene3D	-	50	189	-	-
	Ssu6g1421	702	SUPERFAMILY	Amine oxidase N-terminal region	186	303	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	SUPERFAMILY	Amine oxidase N-terminal region	60	188	IPR016182	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	MobiDBLite	consensus disorder prediction	1	64	-	-
	Ssu6g1421	702	PANTHER	COPPER AMINE OXIDASE	31	688	IPR000269	GO:0005507\|GO:0008131\|GO:0009308\|GO:0048038
	Ssu6g1421	702	MobiDBLite	consensus disorder prediction	47	64	-	-
	Ssu6g1421	702	Gene3D	-	192	294	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1421	Ssu-Chr6	23348838	23356016	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1421	K00276		-	gmx:100817454	1254.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g1421	6	23348838	23356016	Ssu6g1421	6	23348838	23356016	ECH
	Ssu6g1421	6	23348838	23356016	Ssu1g2271	1	64363954	64370870	PCT