Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2271 ATGGCCTCAGCTTCGGAAAAGGCGacgccaccaccaccgccatcTTCTTCTTGCTGTTCCGCCGCCGACTCCGCCGCCGCTGCCATTCCCCGCGTTGCCGCCGCCGCCGCGCCGCAAGAGTGGACCGCCGCCAGCGACGTCCCGCTGATTCGCCCCGTCGATTCTTCCACCAATGCCTCCGCTGCTAAGGGAGTCATTACAATGCCAAAGGCCCAGTCAAGCCACCCTTTGGACCCTTTATCTGCTGCTGAAATCTCTGTGGCCGTGGCAACTGTGAGGGCTGCTGGAGCTACTCCTGAGCTTAGAGATAGTATGCGCTTCGTTGAAGTAGTTTTACTGGAGCCAGATAAAAATGTTGTTGCGCTGGCAGATGCATATTTCTTTCCACCTTTCCAACCATCATTACTTCCGAGAACTAGAGGAGGACCTCTAATTCCAACTAAACTCCCTCCAAGACGTGCTAGACTTGTTGTCTACAATAAGAAATCAAATGAGACTAGTATATGGATTGTTGAATTGTCACAAGTACATGCAGTAACTCGAGGTGGTCATCACCGAGGAAAAGTAATTTTGTCACATGTTGTTCCTGATGTTCAGCCTCCAATGGATGCTGAGGAGTATGCAGAATGCGAGGCTGTTGTCAAAAGTTTTCCCCCATTTATAGAGGCTATGAAGAAAAGGGGTATTGAGGACATGGACCTTGTAATGGTTGATCCCtgGTGTGTTGGTTATCACAGTGAAGCAGATGCTCCTCGGAGAAGACTTGCTAAACCACTCATATTTTGTCAATCTGAGAGTGACTGCCCTATGGAAAATGGATATGCTCGCCCAGTTGAGGGCATCTATGTTCTTGTTGATATGCAAAACATGGTGGTGATAGAGTTTGAAGATCGTAAACTTGTTCCCCTTCCGCCGGTTGATCCCTTGAGGAACTATACTCCTGGTGAAACCAGAGGTGGCTCTGATAGAAGTGATGTAAAACCCTTGCAAATTATTCAGCCTGAAGGTCCAAGCTTCCGTGTCAATGGGTATTTTGTTGAATGGCAGAAGTGGAATTTTCGTATTGGATTCACACCCAAAGAAGGTTTGGTTATATATTCTGTCGCATATGTTGATGGTAGTCATGGGCGAAGGCCTGTTGCTCATAGGCTGAGTTTTGTGGAGATGGTTGTTCCCTATGGAGATCCAAACGACCCACATTACAGAAAAAATGCTTTTGATGCTGGGGAAGATGGCTTGGGAAAGAATGCACATTCCCTCAAGAAGGGATGTGATTGTTTGGGCTACATCAAGTATTTTGATGCTCACTTCACAAATTTCACTGGTGGAGTTGAAACAACCGAAAATTGTGTATGTTTGCATGAAGAGGATCATGGAATTCTCTGGAAGCATCAAGACTGGAGAACTGGCTTAGCAGAAGTCCGAAGATCTAGAAGACTTTCAGTTTCTTTCATATGTACTGTGGCTAACTATGAGTACGggtttttttggcatttttatcAGGATGGAAAGATTGAAGCTGAAGTCAAGCTAACTGGAATTCTCAGCCTAGGAGCCTTGCTGCCTGGAGAGTTTCGAAAATATGGAACCATGATTGCACCTGGTTTATATGCACCAGTTCATCAGCACTTTTTTGTTGCTCGCATGGACATGTCTGTTGATTCTAAACCTGGTGAAGCTTTGAATCAGGTTGTGGAAGTCAATATGAAAGTTGAGGAACCAGGTGAGAATAATGTTCACAATAATGCATTCTATGCTGAAGAGACTTTGCTCAGATCTGAATTGGAAGCCATGCGTGATTGCAATTCTTTGACTGCTCGACATTGGATTGTAAGGAACACAAGAACATGTAATAGAACTGGACAGTTGACAGGCTACAAGCTGGTACCTGGCTCAAACTGCTTACCATTGGCAGGCTCTGAAGCCAAGTTTTTAAGAAGAGCTGCTTTCTTGAAGCATAATTTTTGGGTAACAACATATTCACGTGATGAGATGTTTCCTGGAGGAGAATTTCCTAATCAAAATCCACGTGTTGGTGAAGGACTAGCTACATGGGTTAAGCATAACCGATCTTTGGAAGAAACTAATATAGTGCTTTGGTATGTATTTGGAATCACACATGTTCCTCGTTTGGAAGACTGGCCTGTTATGCCAGTAGAGCACATTGGTTTTATGCTCATGCCTCATGGATTCTTCAACTGTTCACCTGCAACAGATGTCCCGCCTAATGCATGTGAAATGGATTCTAAAGATAGTGACATTAAGGACAATGGTTCTTCGAAACAAATTCAGAGTGGGTTAACGGCAAAGCTTTAG 2316 0.4396 MASASEKATPPPPPSSSCCSAADSAAAAIPRVAAAAAPQEWTAASDVPLIRPVDSSTNASAAKGVITMPKAQSSHPLDPLSAAEISVAVATVRAAGATPELRDSMRFVEVVLLEPDKNVVALADAYFFPPFQPSLLPRTRGGPLIPTKLPPRRARLVVYNKKSNETSIWIVELSQVHAVTRGGHHRGKVILSHVVPDVQPPMDAEEYAECEAVVKSFPPFIEAMKKRGIEDMDLVMVDPWCVGYHSEADAPRRRLAKPLIFCQSESDCPMENGYARPVEGIYVLVDMQNMVVIEFEDRKLVPLPPVDPLRNYTPGETRGGSDRSDVKPLQIIQPEGPSFRVNGYFVEWQKWNFRIGFTPKEGLVIYSVAYVDGSHGRRPVAHRLSFVEMVVPYGDPNDPHYRKNAFDAGEDGLGKNAHSLKKGCDCLGYIKYFDAHFTNFTGGVETTENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFICTVANYEYGFFWHFYQDGKIEAEVKLTGILSLGALLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMSVDSKPGEALNQVVEVNMKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNSLTARHWIVRNTRTCNRTGQLTGYKLVPGSNCLPLAGSEAKFLRRAAFLKHNFWVTTYSRDEMFPGGEFPNQNPRVGEGLATWVKHNRSLEETNIVLWYVFGITHVPRLEDWPVMPVEHIGFMLMPHGFFNCSPATDVPPNACEMDSKDSDIKDNGSSKQIQSGLTAKL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2271 771 SUPERFAMILY Amine oxidase N-terminal region 199 317 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 Gene3D - 58 202 - -
Ssu1g2271 771 PANTHER COPPER AMINE OXIDASE 49 767 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g2271 771 PANTHER AMINE OXIDASE 49 767 - -
Ssu1g2271 771 SUPERFAMILY Amine oxidase catalytic domain 323 742 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 Pfam Copper amine oxidase, enzyme domain 329 737 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 SUPERFAMILY Amine oxidase N-terminal region 73 175 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 Gene3D - 204 307 - -
Ssu1g2271 771 Pfam Copper amine oxidase, N3 domain 200 303 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 Gene3D Copper amine oxidase, catalytic domain 316 742 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 Pfam Copper amine oxidase, N2 domain 75 173 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Ssu1g2271 771 MobiDBLite consensus disorder prediction 747 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2271 Ssu-Chr1 64363954 64370870 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2271 K00276 - gmx:100798722 1445.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2271 1 64363954 64370870 Ssu1g2271 1 64363954 64370870 ECH
Ssu6g1421 6 23348838 23356016 Ssu1g2271 1 64363954 64370870 PCT