Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1418 ATGGGAATGGAAGAGGAGAGCAGCAACAGCAACATAGAAGGTGGCGCCTCGCTGCCGTCGGGTCCCGACGCGAAGAAGCGGAGAGTGACGTACTTCTACGAACCCACGATCGGCGACTACTACTACGGGCAGGGGCACCCGATGAAACCGCACCGCATCCGCATGGCGCACAACCTCGTCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCCGCCTCCCCCGACGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCGCCGTCTCCCCCGAGACCCTCGCCGAGACCGCCTTCGCGCGCCAGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCAACTTCTGCCAGGCCTCCGCCGGCGGCTCCATCGGCGCCGCCGTCAAACTCAACCGCGCTGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCACCATGCCAAGAAGTCCGAGGCCTCGGGGTTCTGTTACGTCAACGACATTGTCCTCGGCATCCTCGAACTTCTCAAAGTTCACAGGCGTGTGCTGTATGTTGACATTGACGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCATTTCATAAGTTTGGGGACTTCTTTCCTGGCACAGGACACATCAAAGACGTTGGGTTGGGCTCAGGAAAGAATTACGCTCTCAATGTTCCCTTAAATGACGGAATGGATGATGAGAATTTCCGTGGTCTGTTTCGAACCGTCATTCAAAAAGTCATGGAGGTTTATCAACCTGAAGCAGTTGTTCTTCAATGTGGGGCTGATTCATTGTCTGGGGACAGGTTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGAGGATATACAATTCGGAATGTTGCTCGATGTTGGTGTTACGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAAtgaatattatgaatattttggcCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGAACACACTAATAGAACAGATTTCCCGACTTCCCCATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTAGAAGTTCCAGAAGAGGAGGAAGAGGACCGGGATACAAGACCAAAACGTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCCGATGAAGCTGGAAAGGCTAATTCCAAGTGCTCAAACTTGACTGCCCATATGAGGGACATTGCAGATGACATGGAAGAGGAGAAGCCAGCAGTGCATCCATCATCTTGTTGTTGA 1422 0.5197 MGMEEESSNSNIEGGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVVHYSLHRRMEINRPFPASPDDIRRFHSDDYVDFLSAVSPETLAETAFARQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGLGSGKNYALNVPLNDGMDDENFRGLFRTVIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLIEQISRLPHAPSVPFQTTPPTLEVPEEEEEDRDTRPKRRKWDGEDYDSDPDEAGKANSKCSNLTAHMRDIADDMEEEKPAVHPSSCC 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1418 473 CDD HDAC_classI 32 339 - -
Ssu6g1418 473 MobiDBLite consensus disorder prediction 1 16 - -
Ssu6g1418 473 PIRSF HDAC_I_euk 6 469 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 48 65 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 81 99 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Ssu6g1418 473 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Ssu6g1418 473 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Ssu6g1418 473 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Ssu6g1418 473 SUPERFAMILY Arginase/deacetylase 27 392 IPR023696 -
Ssu6g1418 473 MobiDBLite consensus disorder prediction 393 473 - -
Ssu6g1418 473 Gene3D Histone deacetylase domain 25 400 IPR037138 -
Ssu6g1418 473 PANTHER HISTONE DEACETYLASE 14 443 - -
Ssu6g1418 473 PANTHER HISTONE DEACETYLASE 6 14 443 - -
Ssu6g1418 473 MobiDBLite consensus disorder prediction 416 440 - -
Ssu6g1418 473 MobiDBLite consensus disorder prediction 1 22 - -
Ssu6g1418 473 Pfam Histone deacetylase domain 46 337 IPR023801 -
Ssu6g1418 473 MobiDBLite consensus disorder prediction 452 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1418 Ssu-Chr6 23272534 23275987 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1418 K06067 - gmx:100807923 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1418 6 23272534 23275987 Ssu6g1418 6 23272534 23275987 ECH
Ssu6g1418 6 23272534 23275987 Ssu1g2268 1 64246140 64255098 PCT