Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2268 atggcGAGAGGGGAGAGAGTAGAGACAGAGAGTGGCGCTTCGTTACCGTCGGTGGGTACGGACGCAAAGAAGCGTAGAGTGACTTATTTCTACGAACCCTGCATCGGCGACTACTACTACGGTCAGGGGCACCCTATGAAGCCCCACCGCATTCGCATGGCCCACAATCTCATCGTCCACTACGGCCTCCACCGCCGCATGCAGGTCAACCGGCCCTTCCCGGCCGGCAAGGCCGACATCGGGCGGTTCCACTCCGACGACTACGTCGACTTCCTCTCCACCGTCTCGCCGCAAATCCTCTCCGAGAACTCGCACTCGCACTACCGCCAGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCGACTTCTGCCGGGCCTCCGCCGGCGGCTCCATCGGCGCCGCCGTCCGCCTCAATCGCGAGGACGCCGACATCGCCATCAACTGGGCCGGCGGCCTCCACCACGCCAAAAAGGCCGAGGCCTCCGGCTTCTGCTACGTCAACGACATCGTTCTCGGCATTCTTGAACTTCTCAAAGTTCATAggCGTGTGCTGtatattgatattgatgttCACCATGGGGATGGCGTTGAGGAGGCATTTTACACTACTGATAGGGTGATGACAGTGTCATTTCATAAGTTTGGGGATTTTTTCCCAGGAACTGGGCACGTTAAAGACATTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCACTCAATGATGGATTGGATGATCAGACTTTCTGTGGTCTGTTTCGCCCCATCATTCAAAAAGTCATGGATGTTTATCTACCGGATGCAGTTGTTCTTCAATGTGGAGCTGACTCGTTGTCTGGTGACCGGTTGGGCTGCTTCAACTTGACTGTGAAGGGTCATGCGGATTGCCTTCGGTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATATACAGTTCGGAACGTTGCTCGTTGTTGGTGTTATGAGACAGCGGTGGCAGTAGGAGTGGAGCCTAATCCTAAGTTGCCTTACAAtgaatattatgaatattttggcCCAGACTATAATCTTCATGTCGAGCCGTCCAACATGGAAAACCTAAACACACCCAGGGATCTGCAACAAATTCGGAATACATTGCTGGAACAACTTTCCAGGCTTCCCCATGCACCCAGTGTACCTTTTCAAACAACACCATCAACCATACACGTTCCAGAAGAGGAAGAGGAGGACATGGATATAAGACCAAAATGTCGCATATGGAGTGGTGAAGATTTTGATTCTGATCAGGATGATGAGATGGCTAGTTCAAAGAACTCTGATTTAACTGCTCAAACGAGCAGGTGTGATCCAGATGAGATGGACGAAGATAAAGATTAA 1398 0.5079 MARGERVETESGASLPSVGTDAKKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAGKADIGRFHSDDYVDFLSTVSPQILSENSHSHYRQLKRFNVGEDCPVFDGLFDFCRASAGGSIGAAVRLNREDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGAGKNYSLNVPLNDGLDDQTFCGLFRPIIQKVMDVYLPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYYEYFGPDYNLHVEPSNMENLNTPRDLQQIRNTLLEQLSRLPHAPSVPFQTTPSTIHVPEEEEEDMDIRPKCRIWSGEDFDSDQDDEMASSKNSDLTAQTSRCDPDEMDEDKD 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2268 465 Gene3D Histone deacetylase domain 16 405 IPR037138 -
Ssu1g2268 465 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 Pfam Histone deacetylase domain 44 337 IPR023801 -
Ssu1g2268 465 PANTHER HISTONE DEACETYLASE 6 11 443 - -
Ssu1g2268 465 MobiDBLite consensus disorder prediction 394 465 - -
Ssu1g2268 465 CDD HDAC_classI 30 339 - -
Ssu1g2268 465 PIRSF HDAC_I_euk 9 465 IPR003084 GO:0004407|GO:0016575
Ssu1g2268 465 SUPERFAMILY Arginase/deacetylase 25 392 IPR023696 -
Ssu1g2268 465 MobiDBLite consensus disorder prediction 409 431 - -
Ssu1g2268 465 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Ssu1g2268 465 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
Ssu1g2268 465 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Ssu1g2268 465 PANTHER HISTONE DEACETYLASE 11 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2268 Ssu-Chr1 64246140 64255098 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2268 K06067 - gmx:100801159 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1418 6 23272534 23275987 Ssu1g2268 1 64246140 64255098 PCT